Package psidev.psi.mi.jami.xml.model.extension.xml300

Class XrefContainer

java.lang.Object

psidev.psi.mi.jami.xml.model.extension.xml300.XrefContainer

All Implemented Interfaces:

com.sun.xml.bind.Locatable, FileSourceContext

Direct Known Subclasses:

CvTermXrefContainer, ExperimentXrefContainer, FeatureXrefContainer, InteractionXrefContainer, InteractorXrefContainer, PublicationXrefContainer

public class XrefContainer
extends Object
implements FileSourceContext, com.sun.xml.bind.Locatable

Xref container in XML implementation The JAXB binding is designed to be read-only and is not designed for writing

Since:

18/07/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Nested Class Summary

Nested Classes

Modifier and Type	Class	Description
protected class	XrefContainer.JAXBSecondaryXrefList

Constructor Summary

Constructors

Constructor	Description
XrefContainer()

Method Summary

Modifier and Type	Method	Description
List<Xref>	getJAXBSecondaryRefs()	Gets the value of the secondaryReves property.
FileSourceLocator	getSourceLocator()	Getter for the field sourceLocator.
List<Xref>	getXrefs()	Getter for the field xrefs.
protected void	initialiseSecondaryRefs()	initialiseSecondaryRefs.
protected void	initialiseSecondaryResWith(XrefContainer.JAXBSecondaryXrefList list)	initialiseSecondaryResWith.
protected void	initialiseXrefs()	initialiseXrefs.
protected void	initialiseXrefsWith(List<Xref> list)	initialiseXrefsWith.
boolean	isEmpty()	isEmpty.
protected void	processAddedPrimaryRef(Xref added)	processAddedPrimaryRef.
void	setJAXBPrimaryRef(Xref value)	Sets the value of the primaryRef property.
void	setSourceLocator(FileSourceLocator sourceLocator)	Sets the source locator
Locator	sourceLocation()
String	toString()	toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

XrefContainer

public XrefContainer()

Method Detail

setJAXBPrimaryRef

public void setJAXBPrimaryRef(Xref value)

Sets the value of the primaryRef property.

Parameters:

value - allowed object is XmlXref

getJAXBSecondaryRefs

public List<Xref> getJAXBSecondaryRefs()

Gets the value of the secondaryReves property.

This accessor method returns a reference to the live list, not a snapshot. Therefore any modification you make to the returned list will be present inside the JAXB object. This is why there is not a set method for the secondaryReves property.

For example, to add a new item, do as follows:

    getSecondaryReves().add(newItem);
 

Objects of the following type(s) are allowed in the list XmlXref

Returns:

a List object.

getXrefs

public List<Xref> getXrefs()

Getter for the field xrefs.

Returns:

a List object.

isEmpty

public boolean isEmpty()

isEmpty.

Returns:

a boolean.

sourceLocation

public Locator sourceLocation()

Specified by:

sourceLocation in interface com.sun.xml.bind.Locatable

getSourceLocator

public FileSourceLocator getSourceLocator()

Getter for the field sourceLocator.

Specified by:

getSourceLocator in interface FileSourceContext

Returns:

a FileSourceLocator object.

setSourceLocator

public void setSourceLocator(FileSourceLocator sourceLocator)

Sets the source locator

Specified by:

setSourceLocator in interface FileSourceContext

Parameters:

sourceLocator - : the file locator

toString

public String toString()

toString

Specified by:

toString in interface FileSourceContext

Overrides:

toString in class Object

Returns:

the file source context as a String. If the source locator is not null, it should give the source locator properties

initialiseXrefs

protected void initialiseXrefs()

initialiseXrefs.

initialiseXrefsWith

protected void initialiseXrefsWith(List<Xref> list)

initialiseXrefsWith.

Parameters:

list - a List object.

initialiseSecondaryRefs

protected void initialiseSecondaryRefs()

initialiseSecondaryRefs.

initialiseSecondaryResWith

protected void initialiseSecondaryResWith(XrefContainer.JAXBSecondaryXrefList list)

initialiseSecondaryResWith.

Parameters:

list - a XrefContainer.JAXBSecondaryXrefList object.

processAddedPrimaryRef

protected void processAddedPrimaryRef(Xref added)

processAddedPrimaryRef.

Parameters:

added - a Xref object.