java.lang.Object
- psidev.psi.mi.jami.xml.utils.PsiXmlUtils

```
public class PsiXmlUtils
extends Object
```
Utility class for psixml
Since:
```
18/07/13
```
Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Field Summary

Fields
Modifier and Type	Field	Description
`static String`	`ABSTRACT_INTERACTION_TAG`	Constant `ABSTRACT_INTERACTION_TAG="abstractInteraction"`
`static String`	`ATTRIBUTE_TAG`	Constant `ATTRIBUTE_TAG="attribute"`
`static String`	`ATTRIBUTELIST_TAG`	Constant `ATTRIBUTELIST_TAG="attributeList"`
`static String`	`AVAILABILITY_TAG`	Constant `AVAILABILITY_TAG="availability"`
`static String`	`AVAILABILITYLIST_TAG`	Constant `AVAILABILITYLIST_TAG="availabilityList"`
`static String`	`ENTRY_TAG`	Constant `ENTRY_TAG="entry"`
`static String`	`ENTRYSET_TAG`	Constant `ENTRYSET_TAG="entrySet"`
`static String`	`EXPERIMENT_TAG`	Constant `EXPERIMENT_TAG="experimentDescription"`
`static String`	`EXPERIMENTLIST_TAG`	Constant `EXPERIMENTLIST_TAG="experimentList"`
`static String`	`INTERACTION_TAG`	Constant `INTERACTION_TAG="interaction"`
`static String`	`INTERACTIONLIST_TAG`	Constant `INTERACTIONLIST_TAG="interactionList"`
`static String`	`INTERACTOR_TAG`	Constant `INTERACTOR_TAG="interactor"`
`static String`	`INTERACTORLIST_TAG`	Constant `INTERACTORLIST_TAG="interactorList"`
`static String`	`LEVEL_ATTRIBUTE`	Constant `LEVEL_ATTRIBUTE="level"`
`static String`	`LINE_BREAK`	Constant `LINE_BREAK="\n"`
`static String`	`MINOR_VERSION_ATTRIBUTE`	Constant `MINOR_VERSION_ATTRIBUTE="minorVersion"`
`static String`	`PSI_SCHEMA_253_LOCATION`	Constant `PSI_SCHEMA_253_LOCATION="net:sf:psidev:mi https://raw.githubuser"{trunked}`
`static String`	`PSI_SCHEMA_254_LOCATION`	Constant `PSI_SCHEMA_254_LOCATION="http://psi.hupo.org/mi/mif https://raw."{trunked}`
`static String`	`PSI_SCHEMA_300_LOCATION`	Constant `PSI_SCHEMA_300_LOCATION="http://psi.hupo.org/mi/mif300 https://r"{trunked}`
`static String`	`SCHEMA_LOCATION_ATTRIBUTE`	Constant `SCHEMA_LOCATION_ATTRIBUTE="schemaLocation"`
`static String`	`SOURCE_TAG`	Constant `SOURCE_TAG="source"`
`static String`	`STOICHIOMETRY_PREFIX`	Constant `STOICHIOMETRY_PREFIX="stoichiometry: "`
`static String`	`UNSPECIFIED`	Constant `UNSPECIFIED="unspecified"`
`static String`	`VERSION_ATTRIBUTE`	Constant `VERSION_ATTRIBUTE="version"`
`static int`	`XML_BUFFER_SIZE`	Constant `XML_BUFFER_SIZE=2048`
`static String`	`XML_SCHEMA`	Constant `XML_SCHEMA="http://www.w3.org/2001/XMLSchema-instan"{trunked}`
`static String`	`XML_SCHEMA_PREFIX`	Constant `XML_SCHEMA_PREFIX="xsi"`
`static String`	`Xml253_NAMESPACE_URI`	Constant `Xml253_NAMESPACE_URI="net:sf:psidev:mi"`
`static String`	`Xml254_NAMESPACE_URI`	Constant `Xml254_NAMESPACE_URI="http://psi.hupo.org/mi/mif"`
`static String`	`Xml300_NAMESPACE_URI`	Constant `Xml300_NAMESPACE_URI="http://psi.hupo.org/mi/mif300"`
`static DateFormat`	`YEAR_FORMAT`	Constant `YEAR_FORMAT`

Constructor Summary

Constructors
Constructor Description

PsiXmlUtils()

Method Summary

All Methods Static Methods Concrete Methods
Modifier and Type	Method	Description
`static CooperativeEffect`	`extractCooperativeEffectFrom(PsiXmlVersion version, Collection<Annotation> annots, Collection<Experiment> experiments, PsiXmlParserListener listener)`	extractCooperativeEffectFrom.
`static void`	`writeCompleteNamesElement(String shortLabel, String fullName, Collection<Alias> aliases, XMLStreamWriter writer, PsiXmlElementWriter<Alias> aliasWriter)`	writeCompleteNamesElement.
`static void`	`writeCompleteNamesForExperiment(NamedExperiment xmlExperiment, XMLStreamWriter writer, PsiXmlElementWriter<Alias> aliasWriter)`	writeCompleteNamesForExperiment.

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Field Detail
  - UNSPECIFIED
```
public static final String UNSPECIFIED
```
    Constant UNSPECIFIED="unspecified"
    
    See Also:
    
    Constant Field Values
  - YEAR_FORMAT
```
public static final DateFormat YEAR_FORMAT
```
    Constant YEAR_FORMAT
  - STOICHIOMETRY_PREFIX
```
public static final String STOICHIOMETRY_PREFIX
```
    Constant STOICHIOMETRY_PREFIX="stoichiometry: "
    
    See Also:
    
    Constant Field Values
  - ENTRYSET_TAG
```
public static final String ENTRYSET_TAG
```
    Constant ENTRYSET_TAG="entrySet"
    
    See Also:
    
    Constant Field Values
  - ENTRY_TAG
```
public static final String ENTRY_TAG
```
    Constant ENTRY_TAG="entry"
    
    See Also:
    
    Constant Field Values
  - EXPERIMENTLIST_TAG
```
public static final String EXPERIMENTLIST_TAG
```
    Constant EXPERIMENTLIST_TAG="experimentList"
    
    See Also:
    
    Constant Field Values
  - INTERACTORLIST_TAG
```
public static final String INTERACTORLIST_TAG
```
    Constant INTERACTORLIST_TAG="interactorList"
    
    See Also:
    
    Constant Field Values
  - INTERACTIONLIST_TAG
```
public static final String INTERACTIONLIST_TAG
```
    Constant INTERACTIONLIST_TAG="interactionList"
    
    See Also:
    
    Constant Field Values
  - EXPERIMENT_TAG
```
public static final String EXPERIMENT_TAG
```
    Constant EXPERIMENT_TAG="experimentDescription"
    
    See Also:
    
    Constant Field Values
  - INTERACTOR_TAG
```
public static final String INTERACTOR_TAG
```
    Constant INTERACTOR_TAG="interactor"
    
    See Also:
    
    Constant Field Values
  - INTERACTION_TAG
```
public static final String INTERACTION_TAG
```
    Constant INTERACTION_TAG="interaction"
    
    See Also:
    
    Constant Field Values
  - ABSTRACT_INTERACTION_TAG
```
public static final String ABSTRACT_INTERACTION_TAG
```
    Constant ABSTRACT_INTERACTION_TAG="abstractInteraction"
    
    See Also:
    
    Constant Field Values
  - SOURCE_TAG
```
public static final String SOURCE_TAG
```
    Constant SOURCE_TAG="source"
    
    See Also:
    
    Constant Field Values
  - AVAILABILITYLIST_TAG
```
public static final String AVAILABILITYLIST_TAG
```
    Constant AVAILABILITYLIST_TAG="availabilityList"
    
    See Also:
    
    Constant Field Values
  - AVAILABILITY_TAG
```
public static final String AVAILABILITY_TAG
```
    Constant AVAILABILITY_TAG="availability"
    
    See Also:
    
    Constant Field Values
  - ATTRIBUTELIST_TAG
```
public static final String ATTRIBUTELIST_TAG
```
    Constant ATTRIBUTELIST_TAG="attributeList"
    
    See Also:
    
    Constant Field Values
  - ATTRIBUTE_TAG
```
public static final String ATTRIBUTE_TAG
```
    Constant ATTRIBUTE_TAG="attribute"
    
    See Also:
    
    Constant Field Values
  - LINE_BREAK
```
public static final String LINE_BREAK
```
    Constant LINE_BREAK="\n"
    
    See Also:
    
    Constant Field Values
  - XML_BUFFER_SIZE
```
public static final int XML_BUFFER_SIZE
```
    Constant XML_BUFFER_SIZE=2048
    
    See Also:
    
    Constant Field Values
  - Xml300_NAMESPACE_URI
```
public static final String Xml300_NAMESPACE_URI
```
    Constant Xml300_NAMESPACE_URI="http://psi.hupo.org/mi/mif300"
    
    See Also:
    
    Constant Field Values
  - Xml254_NAMESPACE_URI
```
public static final String Xml254_NAMESPACE_URI
```
    Constant Xml254_NAMESPACE_URI="http://psi.hupo.org/mi/mif"
    
    See Also:
    
    Constant Field Values
  - Xml253_NAMESPACE_URI
```
public static final String Xml253_NAMESPACE_URI
```
    Constant Xml253_NAMESPACE_URI="net:sf:psidev:mi"
    
    See Also:
    
    Constant Field Values
  - XML_SCHEMA
```
public static final String XML_SCHEMA
```
    Constant XML_SCHEMA="http://www.w3.org/2001/XMLSchema-instan"{trunked}
    
    See Also:
    
    Constant Field Values
  - XML_SCHEMA_PREFIX
```
public static final String XML_SCHEMA_PREFIX
```
    Constant XML_SCHEMA_PREFIX="xsi"
    
    See Also:
    
    Constant Field Values
  - PSI_SCHEMA_300_LOCATION
```
public static final String PSI_SCHEMA_300_LOCATION
```
    Constant PSI_SCHEMA_300_LOCATION="http://psi.hupo.org/mi/mif300 https://r"{trunked}
    
    See Also:
    
    Constant Field Values
  - PSI_SCHEMA_254_LOCATION
```
public static final String PSI_SCHEMA_254_LOCATION
```
    Constant PSI_SCHEMA_254_LOCATION="http://psi.hupo.org/mi/mif https://raw."{trunked}
    
    See Also:
    
    Constant Field Values
  - PSI_SCHEMA_253_LOCATION
```
public static final String PSI_SCHEMA_253_LOCATION
```
    Constant PSI_SCHEMA_253_LOCATION="net:sf:psidev:mi https://raw.githubuser"{trunked}
    
    See Also:
    
    Constant Field Values
  - SCHEMA_LOCATION_ATTRIBUTE
```
public static final String SCHEMA_LOCATION_ATTRIBUTE
```
    Constant SCHEMA_LOCATION_ATTRIBUTE="schemaLocation"
    
    See Also:
    
    Constant Field Values
  - MINOR_VERSION_ATTRIBUTE
```
public static final String MINOR_VERSION_ATTRIBUTE
```
    Constant MINOR_VERSION_ATTRIBUTE="minorVersion"
    
    See Also:
    
    Constant Field Values
  - VERSION_ATTRIBUTE
```
public static final String VERSION_ATTRIBUTE
```
    Constant VERSION_ATTRIBUTE="version"
    
    See Also:
    
    Constant Field Values
  - LEVEL_ATTRIBUTE
```
public static final String LEVEL_ATTRIBUTE
```
    Constant LEVEL_ATTRIBUTE="level"
    
    See Also:
    
    Constant Field Values
- Constructor Detail
  - PsiXmlUtils
```
public PsiXmlUtils()
```
- Method Detail
  - extractCooperativeEffectFrom
```
public static CooperativeEffect extractCooperativeEffectFrom(PsiXmlVersion version,
                                                             Collection<Annotation> annots,
                                                             Collection<Experiment> experiments,
                                                             PsiXmlParserListener listener)
```
    extractCooperativeEffectFrom.
    
    Parameters:
    
    version - a PsiXmlVersion object.
    
    annots - a Collection object.
    
    experiments - a Collection object.
    
    listener - a PsiXmlParserListener object.
    
    Returns:
    
    a CooperativeEffect object.
  - writeCompleteNamesElement
```
public static void writeCompleteNamesElement(String shortLabel,
                                             String fullName,
                                             Collection<Alias> aliases,
                                             XMLStreamWriter writer,
                                             PsiXmlElementWriter<Alias> aliasWriter)
                                      throws XMLStreamException
```
    writeCompleteNamesElement.
    
    Parameters:
    
    shortLabel - a String object.
    
    fullName - a String object.
    
    aliases - a Collection object.
    
    writer - a XMLStreamWriter object.
    
    aliasWriter - a PsiXmlElementWriter object.
    
    Throws:
    
    XMLStreamException - if any.
  - writeCompleteNamesForExperiment
```
public static void writeCompleteNamesForExperiment(NamedExperiment xmlExperiment,
                                                   XMLStreamWriter writer,
                                                   PsiXmlElementWriter<Alias> aliasWriter)
                                            throws XMLStreamException
```
    writeCompleteNamesForExperiment.
    
    Parameters:
    
    xmlExperiment - a NamedExperiment object.
    
    writer - a XMLStreamWriter object.
    
    aliasWriter - a PsiXmlElementWriter object.
    
    Throws:
    
    XMLStreamException - if any.

Class PsiXmlUtils

Field Summary

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Field Detail

UNSPECIFIED

YEAR_FORMAT

STOICHIOMETRY_PREFIX

ENTRYSET_TAG

ENTRY_TAG

EXPERIMENTLIST_TAG

INTERACTORLIST_TAG

INTERACTIONLIST_TAG

EXPERIMENT_TAG

INTERACTOR_TAG

INTERACTION_TAG

ABSTRACT_INTERACTION_TAG

SOURCE_TAG

AVAILABILITYLIST_TAG

AVAILABILITY_TAG

ATTRIBUTELIST_TAG

ATTRIBUTE_TAG

LINE_BREAK

XML_BUFFER_SIZE

Xml300_NAMESPACE_URI

Xml254_NAMESPACE_URI

Xml253_NAMESPACE_URI

XML_SCHEMA

XML_SCHEMA_PREFIX

PSI_SCHEMA_300_LOCATION

PSI_SCHEMA_254_LOCATION

PSI_SCHEMA_253_LOCATION

SCHEMA_LOCATION_ATTRIBUTE

MINOR_VERSION_ATTRIBUTE

VERSION_ATTRIBUTE

LEVEL_ATTRIBUTE

Constructor Detail

PsiXmlUtils

Method Detail

extractCooperativeEffectFrom

writeCompleteNamesElement

writeCompleteNamesForExperiment