Package psidev.psi.mi.jami.bridges.uniprot

Class CachedUniprotProteinFetcher

java.lang.Object

psidev.psi.mi.jami.bridges.fetcher.AbstractCachedFetcher

psidev.psi.mi.jami.bridges.uniprot.CachedUniprotProteinFetcher

All Implemented Interfaces:

CachedFetcher, InteractorFetcher<Protein>, ProteinFetcher

public class CachedUniprotProteinFetcher
extends AbstractCachedFetcher
implements ProteinFetcher

Created with IntelliJ IDEA.

Since:

14/05/13

Author:

Gabriel Aldam (galdam@ebi.ac.uk)

Field Summary

Fields

Modifier and Type	Field	Description
static String	CACHE_NAME	Constant CACHE_NAME="uniprot-service-cache"

Fields inherited from class psidev.psi.mi.jami.bridges.fetcher.AbstractCachedFetcher

EHCACHE_CONFIG_FILE

Constructor Summary

Constructors

Constructor	Description
CachedUniprotProteinFetcher()	Constructor for CachedUniprotProteinFetcher.

Method Summary

Modifier and Type	Method	Description
Collection<Protein>	fetchByIdentifier(String identifier)	Takes a string identifier and returns the interactors which match.
Collection<Protein>	fetchByIdentifiers(Collection<String> identifiers)	Takes a collection of string identifiers and returns the interactors which match.

Methods inherited from class psidev.psi.mi.jami.bridges.fetcher.AbstractCachedFetcher

clearCache, getFromCache, initialiseCache, initialiseCache, shutDownCache, storeInCache

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

CACHE_NAME

public static final String CACHE_NAME

Constant CACHE_NAME="uniprot-service-cache"

See Also:

Constant Field Values

Constructor Detail

CachedUniprotProteinFetcher

public CachedUniprotProteinFetcher()

Constructor for CachedUniprotProteinFetcher.

Method Detail

fetchByIdentifier

public Collection<Protein> fetchByIdentifier(String identifier)
                                      throws BridgeFailedException

Takes a string identifier and returns the interactors which match. Returns an empty collection of no entries are returned

Specified by:

fetchByIdentifier in interface InteractorFetcher<Protein>

Parameters:

identifier - The identifier to search for.

Returns:

The proteins which match the search term. Empty if no matches.

Throws:

BridgeFailedException - A problem has been encountered when contacting the service

fetchByIdentifiers

public Collection<Protein> fetchByIdentifiers(Collection<String> identifiers)
                                       throws BridgeFailedException

Takes a collection of string identifiers and returns the interactors which match. Returns an empty collection of no entries are returned.

Specified by:

fetchByIdentifiers in interface InteractorFetcher<Protein>

Parameters:

identifiers - The identifiers to search for.

Returns:

The proteins which match the search term. Empty if no matches.

Throws:

BridgeFailedException - if any.