Package psidev.psi.mi.jami.model.impl

Class DefaultRange

java.lang.Object

psidev.psi.mi.jami.model.impl.DefaultRange

All Implemented Interfaces:

Range

Direct Known Subclasses:

CsvRange, MitabRange

public class DefaultRange
extends Object
implements Range

Default implementation for Range Notes: The equals and hashcode methods have been overridden to be consistent with UnambiguousRangeAndResultingSequenceComparator

Since:

22/01/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Field Summary

Fields inherited from interface psidev.psi.mi.jami.model.Range

C_TERMINAL_POSITION_SYMBOL, FUZZY_POSITION_SYMBOL, GREATER_THAN_POSITION_SYMBOL, LESS_THAN_POSITION_SYMBOL, N_TERMINAL_POSITION_SYMBOL, POSITION_SEPARATOR, UNDETERMINED_POSITION_SYMBOL

Constructor Summary

Constructors

Constructor	Description
DefaultRange(Position start, Position end)	Constructor for DefaultRange.
DefaultRange(Position start, Position end, boolean isLink)	Constructor for DefaultRange.
DefaultRange(Position start, Position end, boolean isLink, Participant participant)	Constructor for DefaultRange.
DefaultRange(Position start, Position end, boolean isLink, ResultingSequence resultingSequence)	Constructor for DefaultRange.
DefaultRange(Position start, Position end, Participant participant)	Constructor for DefaultRange.
DefaultRange(Position start, Position end, ResultingSequence resultingSequence)	Constructor for DefaultRange.

Method Summary

Modifier and Type	Method	Description
boolean	equals(Object o)
Position	getEnd()	Getter for the field end.
Entity	getParticipant()	Getter for the field participant.
ResultingSequence	getResultingSequence()	Getter for the field resultingSequence.
Position	getStart()	Getter for the field start.
int	hashCode()
boolean	isLink()	isLink
void	setLink(boolean link)	Sets the link boolean for this Range
void	setParticipant(Entity participant)	Sets the participating molecule that the range refers to
void	setPositions(Position start, Position end)	Set the positions of the feature range in the interactor sequence
void	setResultingSequence(ResultingSequence resultingSequence)	Sets the resultingSequence of this range object
String	toString()

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Constructor Detail

DefaultRange

public DefaultRange(Position start,
                    Position end)

Constructor for DefaultRange.

Parameters:

start - a Position object.

end - a Position object.

DefaultRange

public DefaultRange(Position start,
                    Position end,
                    boolean isLink)

Constructor for DefaultRange.

Parameters:

start - a Position object.

end - a Position object.

isLink - a boolean.

DefaultRange

public DefaultRange(Position start,
                    Position end,
                    ResultingSequence resultingSequence)

Constructor for DefaultRange.

Parameters:

start - a Position object.

end - a Position object.

resultingSequence - a ResultingSequence object.

DefaultRange

public DefaultRange(Position start,
                    Position end,
                    boolean isLink,
                    ResultingSequence resultingSequence)

Constructor for DefaultRange.

Parameters:

start - a Position object.

end - a Position object.

isLink - a boolean.

resultingSequence - a ResultingSequence object.

DefaultRange

public DefaultRange(Position start,
                    Position end,
                    Participant participant)

Constructor for DefaultRange.

Parameters:

start - a Position object.

end - a Position object.

participant - a Participant object.

DefaultRange

public DefaultRange(Position start,
                    Position end,
                    boolean isLink,
                    Participant participant)

Constructor for DefaultRange.

Parameters:

start - a Position object.

end - a Position object.

isLink - a boolean.

participant - a Participant object.

Method Detail

getStart

public Position getStart()

Getter for the field start.

Specified by:

getStart in interface Range

Returns:

a Position object.

getEnd

public Position getEnd()

Getter for the field end.

Specified by:

getEnd in interface Range

Returns:

a Position object.

setPositions

public void setPositions(Position start,
                         Position end)

Set the positions of the feature range in the interactor sequence

Specified by:

setPositions in interface Range

Parameters:

start - : start position

end - : end position

isLink

public boolean isLink()

isLink

Specified by:

isLink in interface Range

Returns:

a boolean.

setLink

public void setLink(boolean link)

Sets the link boolean for this Range

Specified by:

setLink in interface Range

Parameters:

link - : the linked value

getResultingSequence

public ResultingSequence getResultingSequence()

Getter for the field resultingSequence.

Specified by:

getResultingSequence in interface Range

Returns:

a ResultingSequence object.

setResultingSequence

public void setResultingSequence(ResultingSequence resultingSequence)

Sets the resultingSequence of this range object

Specified by:

setResultingSequence in interface Range

Parameters:

resultingSequence - : the resulting sequence

getParticipant

public Entity getParticipant()

Getter for the field participant.

Specified by:

getParticipant in interface Range

Returns:

a Entity object.

setParticipant

public void setParticipant(Entity participant)

Sets the participating molecule that the range refers to

Specified by:

setParticipant in interface Range

Parameters:

participant - a Entity object.

equals

public boolean equals(Object o)

Overrides:

equals in class Object

hashCode

public int hashCode()

Overrides:

hashCode in class Object

toString

public String toString()

Overrides:

toString in class Object