Package psidev.psi.mi.jami.enricher.impl.minimal

Class MinimalCvTermUpdater<C extends CvTerm>

java.lang.Object

psidev.psi.mi.jami.enricher.impl.AbstractMIEnricher<C>

psidev.psi.mi.jami.enricher.impl.minimal.MinimalCvTermEnricher<C>

psidev.psi.mi.jami.enricher.impl.minimal.MinimalCvTermUpdater<C>

All Implemented Interfaces:

CvTermEnricher<C>, MIEnricher<C>

public class MinimalCvTermUpdater<C extends CvTerm>
extends MinimalCvTermEnricher<C>

Provides minimal update of cv term. - update shortName of CvTerm if different from the shortname of the fetched CvTerm - update fullname of CvTerm if different from the fullName of the fetched CvTerm - update identifiers of CvTerm. It will add missing identifiers and remove any existing identifiers that are not in the fetched CvTerm using DefaultXrefComparator It will ignore all other properties of a CvTerm

Since:

13/06/13

Author:

Gabriel Aldam (galdam@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
MinimalCvTermUpdater(CvTermFetcher<C> cvTermFetcher)	A constructor matching super.

Method Summary

Modifier and Type	Method	Description
void	processCvTerm(C cvTermToEnrich, C cvTermFetched)	A method that can be overridden to add to or change the behaviour of enrichment without effecting fetching.
protected void	processFullName(C cvTermToEnrich, C cvTermFetched)	processFullName.
protected void	processIdentifiers(C cvTermToEnrich, C cvTermFetched)	processIdentifiers.
protected void	processShortabel(C cvTermToEnrich, C cvTermFetched)	processShortabel.

Methods inherited from class psidev.psi.mi.jami.enricher.impl.minimal.MinimalCvTermEnricher

enrich, find, getCvTermEnricherListener, getCvTermFetcher, getRetryCount, onEnrichedVersionNotFound, setCvTermEnricherListener, setRetryCount

Methods inherited from class psidev.psi.mi.jami.enricher.impl.AbstractMIEnricher

enrich, enrich

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface psidev.psi.mi.jami.enricher.MIEnricher

enrich, enrich

Constructor Detail

MinimalCvTermUpdater

public MinimalCvTermUpdater(CvTermFetcher<C> cvTermFetcher)

A constructor matching super.

Parameters:

cvTermFetcher - The fetcher to initiate the enricher with. If null, an illegal state exception will be thrown at the next enrichment.

Method Detail

processCvTerm

public void processCvTerm(C cvTermToEnrich,
                          C cvTermFetched)
                   throws EnricherException

A method that can be overridden to add to or change the behaviour of enrichment without effecting fetching. A method that can be overridden to add to or change the behaviour of enrichment without effecting fetching.

Overrides:

processCvTerm in class MinimalCvTermEnricher<C extends CvTerm>

Parameters:

cvTermToEnrich - the CvTerm to enrich

cvTermFetched - a C object.

Throws:

EnricherException - if any.

processShortabel

protected void processShortabel(C cvTermToEnrich,
                                C cvTermFetched)
                         throws EnricherException

processShortabel.

Parameters:

cvTermToEnrich - a C object.

cvTermFetched - a C object.

Throws:

EnricherException - if any.

processIdentifiers

protected void processIdentifiers(C cvTermToEnrich,
                                  C cvTermFetched)
                           throws EnricherException

processIdentifiers.

Overrides:

processIdentifiers in class MinimalCvTermEnricher<C extends CvTerm>

Parameters:

cvTermToEnrich - a C object.

cvTermFetched - a C object.

Throws:

EnricherException - if any.

processFullName

protected void processFullName(C cvTermToEnrich,
                               C cvTermFetched)
                        throws EnricherException

processFullName.

Overrides:

processFullName in class MinimalCvTermEnricher<C extends CvTerm>

Parameters:

cvTermToEnrich - a C object.

cvTermFetched - a C object.

Throws:

EnricherException - if any.