Package psidev.psi.mi.jami.enricher.impl.minimal

Class MinimalParticipantEnricher<P extends Participant,F extends Feature>

java.lang.Object

psidev.psi.mi.jami.enricher.impl.minimal.MinimalEntityEnricher<P,F>

psidev.psi.mi.jami.enricher.impl.minimal.MinimalParticipantEnricher<P,F>

All Implemented Interfaces:

EntityEnricher<P,F>, MIEnricher<P>, ParticipantEnricher<P,F>

Direct Known Subclasses:

FullParticipantEnricher, MinimalParticipantEvidenceEnricher, MinimalParticipantPoolEnricher, MinimalParticipantUpdater

public class MinimalParticipantEnricher<P extends Participant,F extends Feature>
extends MinimalEntityEnricher<P,F>
implements ParticipantEnricher<P,F>

The participant enricher is an enricher which can enrich either single participant or a collection. The participant enricher has subEnrichers and no fetchers.

Since:

19/06/13

Author:

Gabriel Aldam (galdam@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
MinimalParticipantEnricher()

Method Summary

Modifier and Type	Method	Description
void	enrich(Collection<P> participantsToEnrich)	enrich.
CvTermEnricher<CvTerm>	getCvTermEnricher()	The current CvTerm enricher, If null, CvTerms will not be enriched.
protected void	processAliases(P objectToEnrich, P objectSource)	processAliases.
protected void	processBiologicalRole(P participantToEnrich)	processBiologicalRole.
void	processBiologicalRole(P objectToEnrich, P objectSource)	processBiologicalRole.
void	processInteractor(P objectToEnrich, P objectSource)	processInteractor.
void	processOtherProperties(P participantToEnrich)	processOtherProperties.
void	processOtherProperties(P objectToEnrich, P objectSource)	processOtherProperties.
void	setCvTermEnricher(CvTermEnricher<CvTerm> cvTermEnricher)	setCvTermEnricher.

Methods inherited from class psidev.psi.mi.jami.enricher.impl.minimal.MinimalEntityEnricher

enrich, enrich, getFeatureEnricher, getInteractorEnricher, getParticipantEnricherListener, processFeatures, processFeatures, processInteractor, setFeatureEnricher, setInteractorEnricher, setParticipantEnricherListener

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface psidev.psi.mi.jami.enricher.EntityEnricher

getFeatureEnricher, getInteractorEnricher, getParticipantEnricherListener, setFeatureEnricher, setInteractorEnricher, setParticipantEnricherListener

Methods inherited from interface psidev.psi.mi.jami.enricher.MIEnricher

enrich, enrich

Constructor Detail

MinimalParticipantEnricher

public MinimalParticipantEnricher()

Method Detail

enrich

public void enrich(Collection<P> participantsToEnrich)
            throws EnricherException

enrich.

Specified by:

enrich in interface MIEnricher<P extends Participant>

Overrides:

enrich in class MinimalEntityEnricher<P extends Participant,F extends Feature>

Parameters:

participantsToEnrich - a Collection object.

Throws:

EnricherException - if any.

processOtherProperties

public void processOtherProperties(P objectToEnrich,
                                   P objectSource)
                            throws EnricherException

processOtherProperties.

Overrides:

processOtherProperties in class MinimalEntityEnricher<P extends Participant,F extends Feature>

Parameters:

objectToEnrich - a P object.

objectSource - a P object.

Throws:

EnricherException - if any.

processInteractor

public void processInteractor(P objectToEnrich,
                              P objectSource)
                       throws EnricherException

processInteractor.

Overrides:

processInteractor in class MinimalEntityEnricher<P extends Participant,F extends Feature>

Parameters:

objectToEnrich - a P object.

objectSource - a P object.

Throws:

EnricherException - if any.

processBiologicalRole

public void processBiologicalRole(P objectToEnrich,
                                  P objectSource)
                           throws EnricherException

processBiologicalRole.

Parameters:

objectToEnrich - a P object.

objectSource - a P object.

Throws:

EnricherException - if any.

processAliases

protected void processAliases(P objectToEnrich,
                              P objectSource)
                       throws EnricherException

processAliases.

Parameters:

objectToEnrich - a P object.

objectSource - a P object.

Throws:

EnricherException - if any.

processOtherProperties

public void processOtherProperties(P participantToEnrich)
                            throws EnricherException

processOtherProperties.

Overrides:

processOtherProperties in class MinimalEntityEnricher<P extends Participant,F extends Feature>

Parameters:

participantToEnrich - a P object.

Throws:

EnricherException - if any.

processBiologicalRole

protected void processBiologicalRole(P participantToEnrich)
                              throws EnricherException

processBiologicalRole.

Parameters:

participantToEnrich - a P object.

Throws:

EnricherException - if any.

setCvTermEnricher

public void setCvTermEnricher(CvTermEnricher<CvTerm> cvTermEnricher)

setCvTermEnricher.

Sets the enricher for CvTerms. If null, cvTerms are not being enriched.

Specified by:

setCvTermEnricher in interface ParticipantEnricher<P extends Participant,F extends Feature>

Parameters:

cvTermEnricher - a CvTermEnricher object.

getCvTermEnricher

public CvTermEnricher<CvTerm> getCvTermEnricher()

The current CvTerm enricher, If null, CvTerms will not be enriched.

Specified by:

getCvTermEnricher in interface ParticipantEnricher<P extends Participant,F extends Feature>

Returns:

The new enricher for CvTerms. Can be null.