Package psidev.psi.mi.jami.enricher.impl.minimal

Class MinimalParticipantEvidenceEnricher<P extends ParticipantEvidence>

java.lang.Object

psidev.psi.mi.jami.enricher.impl.minimal.MinimalEntityEnricher<P,F>

psidev.psi.mi.jami.enricher.impl.minimal.MinimalParticipantEnricher<P,FeatureEvidence>

psidev.psi.mi.jami.enricher.impl.minimal.MinimalParticipantEvidenceEnricher<P>

All Implemented Interfaces:

EntityEnricher<P,FeatureEvidence>, MIEnricher<P>, ParticipantEnricher<P,FeatureEvidence>, ParticipantEvidenceEnricher<P>

Direct Known Subclasses:

FullParticipantEvidenceEnricher, MinimalExperimentalParticipantPoolEnricher, MinimalParticipantEvidenceUpdater

public class MinimalParticipantEvidenceEnricher<P extends ParticipantEvidence>
extends MinimalParticipantEnricher<P,FeatureEvidence>
implements ParticipantEvidenceEnricher<P>

Created with IntelliJ IDEA.

Since:

28/06/13

Author:

Gabriel Aldam (galdam@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
MinimalParticipantEvidenceEnricher()

Method Summary

Modifier and Type	Method	Description
OrganismEnricher	getOrganismEnricher()	Getter for the field organismEnricher.
protected void	mergeIdentificationMethods(P termToEnrich, Collection<CvTerm> toEnrichTerms, Collection<CvTerm> fetchedTerms, boolean remove)	mergeIdentificationMethods.
protected void	processExperimentalRole(P participantEvidenceToEnrich)	processExperimentalRole.
void	processExperimentalRole(P participantEvidenceToEnrich, P objectSource)	processExperimentalRole.
protected void	processExpressedInOrganism(P participantEvidenceToEnrich)	processExpressedInOrganism.
protected void	processExpressedInOrganism(P participantEvidenceToEnrich, P objectSource)	processExpressedInOrganism.
protected void	processIdentificationMethods(P participantEvidenceToEnrich)	processIdentificationMethods.
void	processIdentificationMethods(P participantEvidenceToEnrich, P objectSource)	processIdentificationMethods.
void	processOtherProperties(P participantEvidenceToEnrich)	processOtherProperties.
void	processOtherProperties(P participantEvidenceToEnrich, P objectSource)	processOtherProperties.
void	setOrganismEnricher(OrganismEnricher organismEnricher)	setOrganismEnricher.

Methods inherited from class psidev.psi.mi.jami.enricher.impl.minimal.MinimalParticipantEnricher

enrich, getCvTermEnricher, processAliases, processBiologicalRole, processBiologicalRole, processInteractor, setCvTermEnricher

Methods inherited from class psidev.psi.mi.jami.enricher.impl.minimal.MinimalEntityEnricher

enrich, enrich, getFeatureEnricher, getInteractorEnricher, getParticipantEnricherListener, processFeatures, processFeatures, processInteractor, setFeatureEnricher, setInteractorEnricher, setParticipantEnricherListener

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface psidev.psi.mi.jami.enricher.EntityEnricher

getFeatureEnricher, getInteractorEnricher, getParticipantEnricherListener, setFeatureEnricher, setInteractorEnricher, setParticipantEnricherListener

Methods inherited from interface psidev.psi.mi.jami.enricher.MIEnricher

enrich, enrich, enrich

Methods inherited from interface psidev.psi.mi.jami.enricher.ParticipantEnricher

getCvTermEnricher, setCvTermEnricher

Constructor Detail

MinimalParticipantEvidenceEnricher

public MinimalParticipantEvidenceEnricher()

Method Detail

getOrganismEnricher

public OrganismEnricher getOrganismEnricher()

Getter for the field organismEnricher.

Specified by:

getOrganismEnricher in interface ParticipantEvidenceEnricher<P extends ParticipantEvidence>

Returns:

a OrganismEnricher object.

setOrganismEnricher

public void setOrganismEnricher(OrganismEnricher organismEnricher)

setOrganismEnricher.

Specified by:

setOrganismEnricher in interface ParticipantEvidenceEnricher<P extends ParticipantEvidence>

Parameters:

organismEnricher - a OrganismEnricher object.

processOtherProperties

public void processOtherProperties(P participantEvidenceToEnrich)
                            throws EnricherException

processOtherProperties.

Overrides:

processOtherProperties in class MinimalParticipantEnricher<P extends ParticipantEvidence,FeatureEvidence>

Parameters:

participantEvidenceToEnrich - a P object.

Throws:

EnricherException - if any.

processExpressedInOrganism

protected void processExpressedInOrganism(P participantEvidenceToEnrich)
                                   throws EnricherException

processExpressedInOrganism.

Parameters:

participantEvidenceToEnrich - a P object.

Throws:

EnricherException - if any.

processIdentificationMethods

protected void processIdentificationMethods(P participantEvidenceToEnrich)
                                     throws EnricherException

processIdentificationMethods.

Parameters:

participantEvidenceToEnrich - a P object.

Throws:

EnricherException - if any.

processExperimentalRole

protected void processExperimentalRole(P participantEvidenceToEnrich)
                                throws EnricherException

processExperimentalRole.

Parameters:

participantEvidenceToEnrich - a P object.

Throws:

EnricherException - if any.

processOtherProperties

public void processOtherProperties(P participantEvidenceToEnrich,
                                   P objectSource)
                            throws EnricherException

processOtherProperties.

Overrides:

processOtherProperties in class MinimalParticipantEnricher<P extends ParticipantEvidence,FeatureEvidence>

Parameters:

participantEvidenceToEnrich - a P object.

objectSource - a P object.

Throws:

EnricherException - if any.

processExpressedInOrganism

protected void processExpressedInOrganism(P participantEvidenceToEnrich,
                                          P objectSource)
                                   throws EnricherException

processExpressedInOrganism.

Parameters:

participantEvidenceToEnrich - a P object.

objectSource - a P object.

Throws:

EnricherException - if any.

processIdentificationMethods

public void processIdentificationMethods(P participantEvidenceToEnrich,
                                         P objectSource)
                                  throws EnricherException

processIdentificationMethods.

Parameters:

participantEvidenceToEnrich - a P object.

objectSource - a P object.

Throws:

EnricherException - if any.

processExperimentalRole

public void processExperimentalRole(P participantEvidenceToEnrich,
                                    P objectSource)
                             throws EnricherException

processExperimentalRole.

Parameters:

participantEvidenceToEnrich - a P object.

objectSource - a P object.

Throws:

EnricherException - if any.

mergeIdentificationMethods

protected void mergeIdentificationMethods(P termToEnrich,
                                          Collection<CvTerm> toEnrichTerms,
                                          Collection<CvTerm> fetchedTerms,
                                          boolean remove)
                                   throws EnricherException

mergeIdentificationMethods.

Parameters:

termToEnrich - a P object.

toEnrichTerms - a Collection object.

fetchedTerms - a Collection object.

remove - a boolean.

Throws:

EnricherException - if any.