Package psidev.psi.mi.jami.model.impl

Class DefaultModelledParticipantPool

java.lang.Object

psidev.psi.mi.jami.model.impl.AbstractEntity<F>

psidev.psi.mi.jami.model.impl.AbstractParticipant<I,F>

psidev.psi.mi.jami.model.impl.AbstractParticipantPool<ModelledInteraction,ModelledFeature,ModelledParticipantCandidate>

psidev.psi.mi.jami.model.impl.DefaultModelledParticipantPool

All Implemented Interfaces:

Iterable<ModelledParticipantCandidate>, Collection<ModelledParticipantCandidate>, EventListener, EntityInteractorChangeListener, Entity<ModelledFeature>, ModelledEntity, ModelledParticipant, ModelledParticipantPool, Participant<ModelledInteraction,ModelledFeature>, ParticipantPool<ModelledInteraction,ModelledFeature,ModelledParticipantCandidate>

public class DefaultModelledParticipantPool
extends AbstractParticipantPool<ModelledInteraction,ModelledFeature,ModelledParticipantCandidate>
implements ModelledParticipantPool

Default implementation of ParticipantPool

Since:

29/07/14

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Field Summary

Fields inherited from interface psidev.psi.mi.jami.model.Participant

ACCEPTOR_ROLE, ACCEPTOR_ROLE_MI, BAIT_ROLE, BAIT_ROLE_MI, DONOR_ROLE, DONOR_ROLE_MI, ELECTRON_ACCEPTOR_ROLE, ELECTRON_ACCEPTOR_ROLE_MI, ELECTRON_DONOR_ROLE, ELECTRON_DONOR_ROLE_MI, ENZYME_REGULATOR_ROLE, ENZYME_REGULATOR_ROLE_MI, ENZYME_ROLE, ENZYME_ROLE_MI, ENZYME_TARGET_ROLE, ENZYME_TARGET_ROLE_MI, FLUORESCENCE_ACCEPTOR_ROLE, FLUORESCENCE_ACCEPTOR_ROLE_MI, FLUORESCENCE_DONOR_ROLE, FLUORESCENCE_DONOR_ROLE_MI, INHIBITED, INHIBITED_MI, INHIBITOR, INHIBITOR_MI, NEUTRAL, NEUTRAL_MI, PHOSPHATE_ACCEPTOR_ROLE, PHOSPHATE_ACCEPTOR_ROLE_MI, PHOSPHATE_DONOR_ROLE, PHOSPHATE_DONOR_ROLE_MI, PHOTON_ACCEPTOR_ROLE, PHOTON_ACCEPTOR_ROLE_MI, PHOTON_DONOR_ROLE, PHOTON_DONOR_ROLE_MI, PREDETERMINED, PREDETERMINED_MI, PREY, PREY_MI, PUTATIVE_SELF_ROLE, PUTATIVE_SELF_ROLE_MI, SELF_ROLE, SELF_ROLE_MI, SUPPRESSED_GENE_ROLE, SUPPRESSED_GENE_ROLE_MI, SUPPRESSOR_GENE_ROLE, SUPPRESSOR_GENE_ROLE_MI, UNSPECIFIED_ROLE, UNSPECIFIED_ROLE_MI

Constructor Summary

Constructors

Constructor	Description
DefaultModelledParticipantPool(String poolName)	Constructor for DefaultModelledParticipantPool.
DefaultModelledParticipantPool(String poolName, CvTerm bioRole)	Constructor for DefaultModelledParticipantPool.
DefaultModelledParticipantPool(String poolName, CvTerm bioRole, Stoichiometry stoichiometry)	Constructor for DefaultModelledParticipantPool.
DefaultModelledParticipantPool(String poolName, Stoichiometry stoichiometry)	Constructor for DefaultModelledParticipantPool.

Method Summary

Methods inherited from class psidev.psi.mi.jami.model.impl.AbstractParticipantPool

add, addAll, clear, contains, containsAll, getInteractor, getType, initialiseComponentCandidatesSet, initialiseComponentCandidatesSetWith, isEmpty, iterator, onInteractorUpdate, remove, removeAll, retainAll, setInteractor, setType, size, toArray, toArray, toString

Methods inherited from class psidev.psi.mi.jami.model.impl.AbstractParticipant

addAllFeatures, addFeature, getAliases, getAnnotations, getBiologicalEffect, getBiologicalRole, getInteraction, getXrefs, initialiseAliases, initialiseAliasesWith, initialiseAnnotations, initialiseAnnotationsWith, initialiseXrefs, initialiseXrefsWith, removeAllFeatures, removeFeature, setBiologicalEffect, setBiologicalRole, setInteraction, setInteractionAndAddParticipant

Methods inherited from class psidev.psi.mi.jami.model.impl.AbstractEntity

getCausalRelationships, getChangeListener, getFeatures, getStoichiometry, initialiseCausalRelationships, initialiseCausalRelationshipsWith, initialiseFeatures, initialiseFeaturesWith, setChangeListener, setStoichiometry, setStoichiometry

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface java.util.Collection

add, addAll, clear, contains, containsAll, equals, hashCode, isEmpty, iterator, parallelStream, remove, removeAll, removeIf, retainAll, size, spliterator, stream, toArray, toArray, toArray

Methods inherited from interface psidev.psi.mi.jami.model.Entity

addAllFeatures, addFeature, getCausalRelationships, getChangeListener, getFeatures, getInteractor, getStoichiometry, removeAllFeatures, removeFeature, setChangeListener, setInteractor, setStoichiometry, setStoichiometry

Methods inherited from interface java.lang.Iterable

forEach

Methods inherited from interface psidev.psi.mi.jami.model.Participant

getAliases, getAnnotations, getBiologicalEffect, getBiologicalRole, getInteraction, getXrefs, setBiologicalEffect, setBiologicalRole, setInteraction, setInteractionAndAddParticipant

Methods inherited from interface psidev.psi.mi.jami.model.ParticipantPool

getType, setType

Constructor Detail

DefaultModelledParticipantPool

public DefaultModelledParticipantPool(String poolName)

Constructor for DefaultModelledParticipantPool.

Parameters:

poolName - a String object.

DefaultModelledParticipantPool

public DefaultModelledParticipantPool(String poolName,
                                      CvTerm bioRole)

Constructor for DefaultModelledParticipantPool.

Parameters:

poolName - a String object.

bioRole - a CvTerm object.

DefaultModelledParticipantPool

public DefaultModelledParticipantPool(String poolName,
                                      Stoichiometry stoichiometry)

Constructor for DefaultModelledParticipantPool.

Parameters:

poolName - a String object.

stoichiometry - a Stoichiometry object.

DefaultModelledParticipantPool

public DefaultModelledParticipantPool(String poolName,
                                      CvTerm bioRole,
                                      Stoichiometry stoichiometry)

Constructor for DefaultModelledParticipantPool.

Parameters:

poolName - a String object.

bioRole - a CvTerm object.

stoichiometry - a Stoichiometry object.