java.lang.Object
- psidev.psi.mi.jami.model.impl.AbstractEntity<F>
- - psidev.psi.mi.jami.model.impl.AbstractParticipant<InteractionEvidence,FeatureEvidence>
  - - psidev.psi.mi.jami.model.impl.DefaultParticipantEvidence

All Implemented Interfaces:

Entity<FeatureEvidence>, ExperimentalEntity, Participant<InteractionEvidence,FeatureEvidence>, ParticipantEvidence

Direct Known Subclasses:

CsvParticipantEvidence, DefaultNamedParticipantEvidence, MitabParticipantEvidence
```
public class DefaultParticipantEvidence
extends AbstractParticipant<InteractionEvidence,FeatureEvidence>
implements ParticipantEvidence
```
Default implementation for ParticipantEvidence Notes: The equals and hashcode methods have NOT been overridden because the ParticipantEvidence object is a complex object. To compare ParticipantEvidence objects, you can use some comparators provided by default: - DefaultParticipantEvidenceComparator - UnambiguousParticipantEvidenceComparator - DefaultExactParticipantEvidenceComparator - UnambiguousExactParticipantEvidenceComparator - ParticipantEvidenceComparator
Since:
```
04/02/13
```
Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Field Summary
- Fields inherited from interface psidev.psi.mi.jami.model.Participant
  ACCEPTOR_ROLE, ACCEPTOR_ROLE_MI, BAIT_ROLE, BAIT_ROLE_MI, DONOR_ROLE, DONOR_ROLE_MI, ELECTRON_ACCEPTOR_ROLE, ELECTRON_ACCEPTOR_ROLE_MI, ELECTRON_DONOR_ROLE, ELECTRON_DONOR_ROLE_MI, ENZYME_REGULATOR_ROLE, ENZYME_REGULATOR_ROLE_MI, ENZYME_ROLE, ENZYME_ROLE_MI, ENZYME_TARGET_ROLE, ENZYME_TARGET_ROLE_MI, FLUORESCENCE_ACCEPTOR_ROLE, FLUORESCENCE_ACCEPTOR_ROLE_MI, FLUORESCENCE_DONOR_ROLE, FLUORESCENCE_DONOR_ROLE_MI, INHIBITED, INHIBITED_MI, INHIBITOR, INHIBITOR_MI, NEUTRAL, NEUTRAL_MI, PHOSPHATE_ACCEPTOR_ROLE, PHOSPHATE_ACCEPTOR_ROLE_MI, PHOSPHATE_DONOR_ROLE, PHOSPHATE_DONOR_ROLE_MI, PHOTON_ACCEPTOR_ROLE, PHOTON_ACCEPTOR_ROLE_MI, PHOTON_DONOR_ROLE, PHOTON_DONOR_ROLE_MI, PREDETERMINED, PREDETERMINED_MI, PREY, PREY_MI, PUTATIVE_SELF_ROLE, PUTATIVE_SELF_ROLE_MI, SELF_ROLE, SELF_ROLE_MI, SUPPRESSED_GENE_ROLE, SUPPRESSED_GENE_ROLE_MI, SUPPRESSOR_GENE_ROLE, SUPPRESSOR_GENE_ROLE_MI, UNSPECIFIED_ROLE, UNSPECIFIED_ROLE_MI

Constructor Summary

Constructors
Constructor	Description
`DefaultParticipantEvidence(InteractionEvidence interaction, Interactor interactor, CvTerm participantIdentificationMethod)`	Constructor for DefaultParticipantEvidence.
`DefaultParticipantEvidence(InteractionEvidence interaction, Interactor interactor, CvTerm bioRole, CvTerm participantIdentificationMethod)`	Constructor for DefaultParticipantEvidence.
`DefaultParticipantEvidence(InteractionEvidence interaction, Interactor interactor, CvTerm bioRole, CvTerm expRole, CvTerm participantIdentificationMethod)`	Constructor for DefaultParticipantEvidence.
`DefaultParticipantEvidence(InteractionEvidence interaction, Interactor interactor, CvTerm bioRole, CvTerm expRole, Organism expressedIn, CvTerm participantIdentificationMethod)`	Constructor for DefaultParticipantEvidence.
`DefaultParticipantEvidence(InteractionEvidence interaction, Interactor interactor, CvTerm bioRole, CvTerm expRole, Stoichiometry stoichiometry, CvTerm participantIdentificationMethod)`	Constructor for DefaultParticipantEvidence.
`DefaultParticipantEvidence(InteractionEvidence interaction, Interactor interactor, CvTerm bioRole, CvTerm expRole, Stoichiometry stoichiometry, Organism expressedIn, CvTerm participantIdentificationMethod)`	Constructor for DefaultParticipantEvidence.
`DefaultParticipantEvidence(InteractionEvidence interaction, Interactor interactor, CvTerm bioRole, Stoichiometry stoichiometry, CvTerm participantIdentificationMethod)`	Constructor for DefaultParticipantEvidence.
`DefaultParticipantEvidence(InteractionEvidence interaction, Interactor interactor, Stoichiometry stoichiometry, CvTerm participantIdentificationMethod)`	Constructor for DefaultParticipantEvidence.
`DefaultParticipantEvidence(Interactor interactor)`	Constructor for DefaultParticipantEvidence.
`DefaultParticipantEvidence(Interactor interactor, CvTerm participantIdentificationMethod)`	Constructor for DefaultParticipantEvidence.
`DefaultParticipantEvidence(Interactor interactor, CvTerm bioRole, CvTerm participantIdentificationMethod)`	Constructor for DefaultParticipantEvidence.
`DefaultParticipantEvidence(Interactor interactor, CvTerm bioRole, CvTerm expRole, CvTerm participantIdentificationMethod)`	Constructor for DefaultParticipantEvidence.
`DefaultParticipantEvidence(Interactor interactor, CvTerm bioRole, CvTerm expRole, Organism expressedIn, CvTerm participantIdentificationMethod)`	Constructor for DefaultParticipantEvidence.
`DefaultParticipantEvidence(Interactor interactor, CvTerm bioRole, CvTerm expRole, Stoichiometry stoichiometry, CvTerm participantIdentificationMethod)`	Constructor for DefaultParticipantEvidence.
`DefaultParticipantEvidence(Interactor interactor, CvTerm bioRole, CvTerm expRole, Stoichiometry stoichiometry, Organism expressedIn, CvTerm participantIdentificationMethod)`	Constructor for DefaultParticipantEvidence.
`DefaultParticipantEvidence(Interactor interactor, Stoichiometry stoichiometry)`	Constructor for DefaultParticipantEvidence.
`DefaultParticipantEvidence(Interactor interactor, Stoichiometry stoichiometry, CvTerm participantIdentificationMethod)`	Constructor for DefaultParticipantEvidence.

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`Collection<Confidence>`	`getConfidences()`	Getter for the field `confidences`.
`Collection<CvTerm>`	`getExperimentalPreparations()`	Getter for the field `experimentalPreparations`.
`CvTerm`	`getExperimentalRole()`	Getter for the field `experimentalRole`.
`Organism`	`getExpressedInOrganism()`	getExpressedInOrganism
`Collection<CvTerm>`	`getIdentificationMethods()`	Getter for the field `identificationMethods`.
`Collection<Parameter>`	`getParameters()`	Getter for the field `parameters`.
`protected void`	`initialiseConfidences()`	initialiseConfidences
`protected void`	`initialiseConfidencesWith(Collection<Confidence> confidences)`	initialiseConfidencesWith
`protected void`	`initialiseExperimentalPreparations()`	initialiseExperimentalPreparations
`protected void`	`initialiseExperimentalPreparationsWith(Collection<CvTerm> expPreparations)`	initialiseExperimentalPreparationsWith
`protected void`	`initialiseIdentificationMethods()`	initialiseIdentificationMethods
`protected void`	`initialiseIdentificationMethodsWith(Collection<CvTerm> methods)`	initialiseIdentificationMethodsWith
`protected void`	`initialiseParameters()`	initialiseParameters
`protected void`	`initialiseParametersWith(Collection<Parameter> parameters)`	initialiseParametersWith
`void`	`setExperimentalRole(CvTerm expRole)`	Sets the experimental role.
`void`	`setExpressedInOrganism(Organism organism)`	Sets the expressed in organism
`String`	`toString()`

Methods inherited from class psidev.psi.mi.jami.model.impl.AbstractParticipant
addAllFeatures, addFeature, getAliases, getAnnotations, getBiologicalEffect, getBiologicalRole, getInteraction, getXrefs, initialiseAliases, initialiseAliasesWith, initialiseAnnotations, initialiseAnnotationsWith, initialiseXrefs, initialiseXrefsWith, removeAllFeatures, removeFeature, setBiologicalEffect, setBiologicalRole, setInteraction, setInteractionAndAddParticipant

Methods inherited from class psidev.psi.mi.jami.model.impl.AbstractEntity
getCausalRelationships, getChangeListener, getFeatures, getInteractor, getStoichiometry, initialiseCausalRelationships, initialiseCausalRelationshipsWith, initialiseFeatures, initialiseFeaturesWith, setChangeListener, setInteractor, setStoichiometry, setStoichiometry

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface psidev.psi.mi.jami.model.Entity
addAllFeatures, addFeature, getCausalRelationships, getChangeListener, getFeatures, getInteractor, getStoichiometry, removeAllFeatures, removeFeature, setChangeListener, setInteractor, setStoichiometry, setStoichiometry

Methods inherited from interface psidev.psi.mi.jami.model.Participant
getAliases, getAnnotations, getBiologicalEffect, getBiologicalRole, getInteraction, getXrefs, setBiologicalEffect, setBiologicalRole, setInteraction, setInteractionAndAddParticipant