Package psidev.psi.mi.jami.tab.io.writer

Class AbstractMitab27BinaryWriter<T extends BinaryInteraction,P extends Participant>

java.lang.Object

psidev.psi.mi.jami.tab.io.writer.AbstractMitab25BinaryWriter<T,P>

psidev.psi.mi.jami.tab.io.writer.AbstractMitab26BinaryWriter<T,P>

psidev.psi.mi.jami.tab.io.writer.AbstractMitab27BinaryWriter<T,P>

All Implemented Interfaces:

InteractionWriter<T>

Direct Known Subclasses:

AbstractMitab28BinaryWriter, LightMitab27BinaryWriter, Mitab27BinaryEvidenceWriter, Mitab27BinaryEvidenceWriter, Mitab27BinaryWriter, Mitab27ModelledBinaryWriter, Mitab27ModelledBinaryWriter

public abstract class AbstractMitab27BinaryWriter<T extends BinaryInteraction,P extends Participant>
extends AbstractMitab26BinaryWriter<T,P>

Abstract mitab 2.7 writer for binary interactions

Since:

20/06/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
AbstractMitab27BinaryWriter()	Constructor for AbstractMitab27BinaryWriter.
AbstractMitab27BinaryWriter(File file)	Constructor for AbstractMitab27BinaryWriter.
AbstractMitab27BinaryWriter(OutputStream output)	Constructor for AbstractMitab27BinaryWriter.
AbstractMitab27BinaryWriter(Writer writer)	Constructor for AbstractMitab27BinaryWriter.

Method Summary

Modifier and Type	Method	Description
protected void	writeBinary(T interaction, P a, P b)	Writes the binary interaction and its participants in MITAB 2.5

Methods inherited from class psidev.psi.mi.jami.tab.io.writer.AbstractMitab25BinaryWriter

close, end, flush, getColumnFeeder, getVersion, getWriter, hasStarted, initialiseColumnFeeder, initialiseContext, isWriteHeader, reset, setColumnFeeder, setStarted, setVersion, setWriteHeader, start, write, write, write, writeHeader

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

AbstractMitab27BinaryWriter

public AbstractMitab27BinaryWriter()

Constructor for AbstractMitab27BinaryWriter.

AbstractMitab27BinaryWriter

public AbstractMitab27BinaryWriter(File file)
                            throws IOException

Constructor for AbstractMitab27BinaryWriter.

Parameters:

file - a File object.

Throws:

IOException - if any.

AbstractMitab27BinaryWriter

public AbstractMitab27BinaryWriter(OutputStream output)

Constructor for AbstractMitab27BinaryWriter.

Parameters:

output - a OutputStream object.

AbstractMitab27BinaryWriter

public AbstractMitab27BinaryWriter(Writer writer)

Constructor for AbstractMitab27BinaryWriter.

Parameters:

writer - a Writer object.

Method Detail

writeBinary

protected void writeBinary(T interaction,
                           P a,
                           P b)
                    throws IOException

Writes the binary interaction and its participants in MITAB 2.5 Writes the binary interaction and its participants in MITAB 2.6 Writes the binary interaction and its participants in MITAB 2.7

Overrides:

writeBinary in class AbstractMitab26BinaryWriter<T extends BinaryInteraction,P extends Participant>

Parameters:

interaction - a binary interaction

a - participant a

b - participant b

Throws:

IOException - if any.