Package psidev.psi.mi.jami.tab.io.writer

Class AbstractMitab28BinaryWriter<T extends BinaryInteraction,P extends Participant>

java.lang.Object

psidev.psi.mi.jami.tab.io.writer.AbstractMitab25BinaryWriter<T,P>

psidev.psi.mi.jami.tab.io.writer.AbstractMitab26BinaryWriter<T,P>

psidev.psi.mi.jami.tab.io.writer.AbstractMitab27BinaryWriter<T,P>

psidev.psi.mi.jami.tab.io.writer.AbstractMitab28BinaryWriter<T,P>

All Implemented Interfaces:

InteractionWriter<T>

Direct Known Subclasses:

LightMitab28BinaryWriter, Mitab28BinaryEvidenceWriter, Mitab28BinaryEvidenceWriter, Mitab28BinaryWriter, Mitab28ModelledBinaryWriter, Mitab28ModelledBinaryWriter

public abstract class AbstractMitab28BinaryWriter<T extends BinaryInteraction,P extends Participant>
extends AbstractMitab27BinaryWriter<T,P>

Abstract mitab 2.8 writer for binary interactions

Since:

20/06/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
AbstractMitab28BinaryWriter()	Constructor for AbstractMitab28BinaryWriter.
AbstractMitab28BinaryWriter(File file)	Constructor for AbstractMitab28BinaryWriter.
AbstractMitab28BinaryWriter(OutputStream output)	Constructor for AbstractMitab28BinaryWriter.
AbstractMitab28BinaryWriter(Writer writer)	Constructor for AbstractMitab28BinaryWriter.

Method Summary

Modifier and Type	Method	Description
protected void	writeBinary(T interaction, P a, P b)	Writes the binary interaction and its participants in MITAB 2.5

Methods inherited from class psidev.psi.mi.jami.tab.io.writer.AbstractMitab25BinaryWriter

close, end, flush, getColumnFeeder, getVersion, getWriter, hasStarted, initialiseColumnFeeder, initialiseContext, isWriteHeader, reset, setColumnFeeder, setStarted, setVersion, setWriteHeader, start, write, write, write, writeHeader

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

AbstractMitab28BinaryWriter

public AbstractMitab28BinaryWriter()

Constructor for AbstractMitab28BinaryWriter.

AbstractMitab28BinaryWriter

public AbstractMitab28BinaryWriter(File file)
                            throws IOException

Constructor for AbstractMitab28BinaryWriter.

Parameters:

file - a File object.

Throws:

IOException - if any.

AbstractMitab28BinaryWriter

public AbstractMitab28BinaryWriter(OutputStream output)

Constructor for AbstractMitab28BinaryWriter.

Parameters:

output - a OutputStream object.

AbstractMitab28BinaryWriter

public AbstractMitab28BinaryWriter(Writer writer)

Constructor for AbstractMitab28BinaryWriter.

Parameters:

writer - a Writer object.

Method Detail

writeBinary

protected void writeBinary(T interaction,
                           P a,
                           P b)
                    throws IOException

Writes the binary interaction and its participants in MITAB 2.5 Writes the binary interaction and its participants in MITAB 2.6 Writes the binary interaction and its participants in MITAB 2.7 Writes the binary interaction and its participants in MITAB 2.8

Overrides:

writeBinary in class AbstractMitab27BinaryWriter<T extends BinaryInteraction,P extends Participant>

Parameters:

interaction - a binary interaction

a - participant a

b - participant b

Throws:

IOException - if any.