Package psidev.psi.mi.jami.tab.io.writer.extended

Class Mitab27EvidenceWriter

java.lang.Object

psidev.psi.mi.jami.tab.io.writer.AbstractMitabWriter<InteractionEvidence,BinaryInteractionEvidence,ParticipantEvidence>

psidev.psi.mi.jami.tab.io.writer.extended.Mitab25EvidenceWriter

psidev.psi.mi.jami.tab.io.writer.extended.Mitab26EvidenceWriter

psidev.psi.mi.jami.tab.io.writer.extended.Mitab27EvidenceWriter

All Implemented Interfaces:

InteractionWriter<InteractionEvidence>

Direct Known Subclasses:

Mitab28EvidenceWriter

public class Mitab27EvidenceWriter
extends Mitab26EvidenceWriter

Mitab 2.7 writer for interaction evidence

Since:

20/06/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
Mitab27EvidenceWriter()	Constructor for Mitab27EvidenceWriter.
Mitab27EvidenceWriter(File file)	Constructor for Mitab27EvidenceWriter.
Mitab27EvidenceWriter(File file, ComplexExpansionMethod<InteractionEvidence,BinaryInteractionEvidence> expansionMethod)	Constructor for Mitab27EvidenceWriter.
Mitab27EvidenceWriter(OutputStream output)	Constructor for Mitab27EvidenceWriter.
Mitab27EvidenceWriter(OutputStream output, ComplexExpansionMethod<InteractionEvidence,BinaryInteractionEvidence> expansionMethod)	Constructor for Mitab27EvidenceWriter.
Mitab27EvidenceWriter(Writer writer)	Constructor for Mitab27EvidenceWriter.
Mitab27EvidenceWriter(Writer writer, ComplexExpansionMethod<InteractionEvidence,BinaryInteractionEvidence> expansionMethod)	Constructor for Mitab27EvidenceWriter.

Method Summary

Modifier and Type	Method	Description
MitabVersion	getVersion()	getVersion.
protected void	initialiseFile(File file)	initialiseFile.
protected void	initialiseOutputStream(OutputStream output)	initialiseOutputStream.
protected void	initialiseWriter(Writer writer)	initialiseWriter.

Methods inherited from class psidev.psi.mi.jami.tab.io.writer.extended.Mitab25EvidenceWriter

initialiseExpansionMethod

Methods inherited from class psidev.psi.mi.jami.tab.io.writer.AbstractMitabWriter

close, end, flush, getBinaryWriter, getExpansionMethod, hasStarted, initialiseContext, isWriteHeader, reset, setBinaryWriter, setExpansionMethod, setStarted, setWriteHeader, start, write, write, write

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

Mitab27EvidenceWriter

public Mitab27EvidenceWriter()

Constructor for Mitab27EvidenceWriter.

Mitab27EvidenceWriter

public Mitab27EvidenceWriter(File file)
                      throws IOException

Constructor for Mitab27EvidenceWriter.

Parameters:

file - a File object.

Throws:

IOException - if any.

Mitab27EvidenceWriter

public Mitab27EvidenceWriter(OutputStream output)

Constructor for Mitab27EvidenceWriter.

Parameters:

output - a OutputStream object.

Mitab27EvidenceWriter

public Mitab27EvidenceWriter(Writer writer)

Constructor for Mitab27EvidenceWriter.

Parameters:

writer - a Writer object.

Mitab27EvidenceWriter

public Mitab27EvidenceWriter(OutputStream output,
                             ComplexExpansionMethod<InteractionEvidence,BinaryInteractionEvidence> expansionMethod)

Constructor for Mitab27EvidenceWriter.

Parameters:

output - a OutputStream object.

expansionMethod - a ComplexExpansionMethod object.

Mitab27EvidenceWriter

public Mitab27EvidenceWriter(File file,
                             ComplexExpansionMethod<InteractionEvidence,BinaryInteractionEvidence> expansionMethod)
                      throws IOException

Constructor for Mitab27EvidenceWriter.

Parameters:

file - a File object.

expansionMethod - a ComplexExpansionMethod object.

Throws:

IOException - if any.

Mitab27EvidenceWriter

public Mitab27EvidenceWriter(Writer writer,
                             ComplexExpansionMethod<InteractionEvidence,BinaryInteractionEvidence> expansionMethod)

Constructor for Mitab27EvidenceWriter.

Parameters:

writer - a Writer object.

expansionMethod - a ComplexExpansionMethod object.

Method Detail

getVersion

public MitabVersion getVersion()

getVersion.

Overrides:

getVersion in class Mitab26EvidenceWriter

Returns:

a MitabVersion object.

initialiseWriter

protected void initialiseWriter(Writer writer)

initialiseWriter.

Overrides:

initialiseWriter in class Mitab26EvidenceWriter

Parameters:

writer - a Writer object.

initialiseOutputStream

protected void initialiseOutputStream(OutputStream output)

initialiseOutputStream.

Overrides:

initialiseOutputStream in class Mitab26EvidenceWriter

Parameters:

output - a OutputStream object.

initialiseFile

protected void initialiseFile(File file)
                       throws IOException

initialiseFile.

Overrides:

initialiseFile in class Mitab26EvidenceWriter

Parameters:

file - a File object.

Throws:

IOException - if any.