Package psidev.psi.mi.jami.tab.io.writer.extended

Class Mitab28BinaryWriter

java.lang.Object

psidev.psi.mi.jami.tab.io.writer.AbstractMitab25BinaryWriter<T,P>

psidev.psi.mi.jami.tab.io.writer.AbstractMitab26BinaryWriter<T,P>

psidev.psi.mi.jami.tab.io.writer.AbstractMitab27BinaryWriter<T,P>

psidev.psi.mi.jami.tab.io.writer.AbstractMitab28BinaryWriter<BinaryInteraction,Participant>

psidev.psi.mi.jami.tab.io.writer.Mitab28BinaryWriter

psidev.psi.mi.jami.tab.io.writer.extended.Mitab28BinaryWriter

All Implemented Interfaces:

InteractionWriter<BinaryInteraction>

public class Mitab28BinaryWriter
extends Mitab28BinaryWriter

The basic Mitab 2.8 writer for BinaryInteraction

Since:

20/06/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
Mitab28BinaryWriter()	Constructor for Mitab28BinaryWriter.
Mitab28BinaryWriter(File file)	Constructor for Mitab28BinaryWriter.
Mitab28BinaryWriter(OutputStream output)	Constructor for Mitab28BinaryWriter.
Mitab28BinaryWriter(Writer writer)	Constructor for Mitab28BinaryWriter.

Method Summary

Modifier and Type	Method	Description
protected void	initialiseColumnFeeder()	initialiseColumnFeeder.
void	initialiseContext(Map<String,Object> options)	Initialise the context of the InteractionWriter given a map of options
protected void	initialiseSubWritersWith(Writer writer)	initialiseSubWritersWith.

Methods inherited from class psidev.psi.mi.jami.tab.io.writer.Mitab28BinaryWriter

close, reset, setBinaryEvidenceWriter, setModelledBinaryWriter, setWriteHeader, start, write

Methods inherited from class psidev.psi.mi.jami.tab.io.writer.AbstractMitab28BinaryWriter

writeBinary

Methods inherited from class psidev.psi.mi.jami.tab.io.writer.AbstractMitab25BinaryWriter

end, flush, getColumnFeeder, getVersion, getWriter, hasStarted, isWriteHeader, setColumnFeeder, setStarted, setVersion, write, write, writeHeader

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

Mitab28BinaryWriter

public Mitab28BinaryWriter()

Constructor for Mitab28BinaryWriter.

Mitab28BinaryWriter

public Mitab28BinaryWriter(File file)
                    throws IOException

Constructor for Mitab28BinaryWriter.

Parameters:

file - a File object.

Throws:

IOException - if any.

Mitab28BinaryWriter

public Mitab28BinaryWriter(OutputStream output)

Constructor for Mitab28BinaryWriter.

Parameters:

output - a OutputStream object.

Mitab28BinaryWriter

public Mitab28BinaryWriter(Writer writer)

Constructor for Mitab28BinaryWriter.

Parameters:

writer - a Writer object.

Method Detail

initialiseContext

public void initialiseContext(Map<String,Object> options)

Initialise the context of the InteractionWriter given a map of options

Specified by:

initialiseContext in interface InteractionWriter<BinaryInteraction>

Overrides:

initialiseContext in class Mitab28BinaryWriter

Parameters:

options - : the options given by the user

initialiseColumnFeeder

protected void initialiseColumnFeeder()

initialiseColumnFeeder.

Overrides:

initialiseColumnFeeder in class Mitab28BinaryWriter

initialiseSubWritersWith

protected void initialiseSubWritersWith(Writer writer)

initialiseSubWritersWith.

Overrides:

initialiseSubWritersWith in class Mitab28BinaryWriter

Parameters:

writer - a Writer object.