Package psidev.psi.mi.jami.utils.comparator.interaction

Class InteractionComparator

java.lang.Object

psidev.psi.mi.jami.utils.comparator.interaction.InteractionComparator

All Implemented Interfaces:

Comparator<Interaction>

Direct Known Subclasses:

UnambiguousCuratedInteractionComparator, UnambiguousExactCuratedInteractionComparator, UnambiguousExactInteractionComparator, UnambiguousInteractionComparator

public class InteractionComparator
extends Object
implements Comparator<Interaction>

Generic interaction comparator. Modelled interactions come first, then experimental interactions. - It uses InteractionEvidenceComparator to compare experimental interactions - It uses ModelledInteractionComparator to compare modelled interactions - It uses AbstractInteractionBaseComparator to compare basic interaction properties

Since:

04/02/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
InteractionComparator(Comparator<Interaction> interactionBaseComparator, ModelledInteractionComparator modelledInteractionComparator, InteractionEvidenceComparator experimentalInteractionComparator)	Constructor for InteractionComparator.

Method Summary

Modifier and Type	Method	Description
int	compare(Interaction interaction1, Interaction interaction2)	Modelled interactions come first, then experimental interactions.
InteractionEvidenceComparator	getExperimentalInteractionComparator()	Getter for the field experimentalInteractionComparator.
Comparator<Interaction>	getInteractionBaseComparator()	Getter for the field interactionBaseComparator.
ModelledInteractionComparator	getModelledInteractionComparator()	Getter for the field modelledInteractionComparator.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface java.util.Comparator

equals, reversed, thenComparing, thenComparing, thenComparing, thenComparingDouble, thenComparingInt, thenComparingLong

Constructor Detail

InteractionComparator

public InteractionComparator(Comparator<Interaction> interactionBaseComparator,
                             ModelledInteractionComparator modelledInteractionComparator,
                             InteractionEvidenceComparator experimentalInteractionComparator)

Constructor for InteractionComparator.

Parameters:

interactionBaseComparator - a Comparator object.

modelledInteractionComparator - a ModelledInteractionComparator object.

experimentalInteractionComparator - a InteractionEvidenceComparator object.

Method Detail

getInteractionBaseComparator

public Comparator<Interaction> getInteractionBaseComparator()

Getter for the field interactionBaseComparator.

Returns:

a Comparator object.

getExperimentalInteractionComparator

public InteractionEvidenceComparator getExperimentalInteractionComparator()

Getter for the field experimentalInteractionComparator.

Returns:

a InteractionEvidenceComparator object.

getModelledInteractionComparator

public ModelledInteractionComparator getModelledInteractionComparator()

Getter for the field modelledInteractionComparator.

Returns:

a ModelledInteractionComparator object.

compare

public int compare(Interaction interaction1,
                   Interaction interaction2)

Modelled interactions come first, then experimental interactions. - It uses InteractionEvidenceComparator to compare experimental interactions - It uses ModelledInteractionComparator to compare modelled interactions - It uses AbstractInteractionBaseComparator to compare basic interaction properties

Specified by:

compare in interface Comparator<Interaction>

Parameters:

interaction1 - a Interaction object.

interaction2 - a Interaction object.

Returns:

a int.