Package psidev.psi.mi.jami.utils.comparator.interaction

Class UnambiguousCuratedInteractionComparator

java.lang.Object

psidev.psi.mi.jami.utils.comparator.interaction.InteractionComparator

psidev.psi.mi.jami.utils.comparator.interaction.UnambiguousCuratedInteractionComparator

All Implemented Interfaces:

Comparator<Interaction>

public class UnambiguousCuratedInteractionComparator
extends InteractionComparator

Unambiguous curated Generic interaction comparator. Modelled interactions come first and then experimental interactions - It uses UnambiguousCuratedInteractionEvidenceComparator to compare experimental interactions - It uses UnambiguousCuratedModelledInteractionComparator to compare modelled interactions - It uses UnambiguousCuratedInteractionBaseComparator to compare basic interaction properties

Since:

05/02/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
UnambiguousCuratedInteractionComparator()	Creates a new UnambiguousCuratedInteractionComparator.

Method Summary

Modifier and Type	Method	Description
static boolean	areEquals(Interaction interaction1, Interaction interaction2)	Use UnambiguousCuratedInteractionComparator to know if two interactions are equals.
int	compare(Interaction interaction1, Interaction interaction2)	Experimental interactions come first, then allosteric interactions, then cooperative interactions, then modelled interactions.
UnambiguousCuratedInteractionEvidenceComparator	getExperimentalInteractionComparator()	Getter for the field experimentalInteractionComparator.
UnambiguousCuratedInteractionBaseComparator	getInteractionBaseComparator()	Getter for the field interactionBaseComparator.
UnambiguousCuratedModelledInteractionComparator	getModelledInteractionComparator()	Getter for the field modelledInteractionComparator.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface java.util.Comparator

equals, reversed, thenComparing, thenComparing, thenComparing, thenComparingDouble, thenComparingInt, thenComparingLong

Constructor Detail

UnambiguousCuratedInteractionComparator

public UnambiguousCuratedInteractionComparator()

Creates a new UnambiguousCuratedInteractionComparator.

Method Detail

getInteractionBaseComparator

public UnambiguousCuratedInteractionBaseComparator getInteractionBaseComparator()

Getter for the field interactionBaseComparator.

Overrides:

getInteractionBaseComparator in class InteractionComparator

Returns:

a Comparator object.

getExperimentalInteractionComparator

public UnambiguousCuratedInteractionEvidenceComparator getExperimentalInteractionComparator()

Getter for the field experimentalInteractionComparator.

Overrides:

getExperimentalInteractionComparator in class InteractionComparator

Returns:

a InteractionEvidenceComparator object.

getModelledInteractionComparator

public UnambiguousCuratedModelledInteractionComparator getModelledInteractionComparator()

Description copied from class: InteractionComparator

Getter for the field modelledInteractionComparator.

Overrides:

getModelledInteractionComparator in class InteractionComparator

Returns:

a ModelledInteractionComparator object.

compare

public int compare(Interaction interaction1,
                   Interaction interaction2)

Experimental interactions come first, then allosteric interactions, then cooperative interactions, then modelled interactions. Modelled interactions come first and then experimental interactions - It uses UnambiguousCuratedInteractionEvidenceComparator to compare experimental interactions - It uses UnambiguousCuratedModelledInteractionComparator to compare modelled interactions - It uses UnambiguousCuratedInteractionBaseComparator to compare basic interaction properties

Specified by:

compare in interface Comparator<Interaction>

Overrides:

compare in class InteractionComparator

Parameters:

interaction1 - a Interaction object.

interaction2 - a Interaction object.

Returns:

a int.

areEquals

public static boolean areEquals(Interaction interaction1,
                                Interaction interaction2)

Use UnambiguousCuratedInteractionComparator to know if two interactions are equals.

Parameters:

interaction1 - a Interaction object.

interaction2 - a Interaction object.

Returns:

true if the two interactions are equal