Package psidev.psi.mi.jami.utils.comparator.participant

Class UnambiguousParticipantEvidenceComparator

java.lang.Object

psidev.psi.mi.jami.utils.comparator.participant.ParticipantEvidenceComparator

psidev.psi.mi.jami.utils.comparator.participant.UnambiguousParticipantEvidenceComparator

All Implemented Interfaces:

Comparator<ParticipantEvidence>

public class UnambiguousParticipantEvidenceComparator
extends ParticipantEvidenceComparator

Unambiguous Experimental participant comparator. It will first compares experimental roles using UnambiguousCvTermComparator. If both experimental roles are equals, it will look at the identification methods using UnambiguousCvTermComparator. If both identification methods are equals, it will look at the experimental preparations using UnambiguousCvTermComparator. If both experimental preparations are equals, it will look at the expressed in organisms using UnambiguousOrganismComparator.

Since:

17/01/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
UnambiguousParticipantEvidenceComparator()	Creates a new UnambiguousParticipantEvidenceComparator.

Method Summary

Modifier and Type	Method	Description
static boolean	areEquals(ParticipantEvidence experimentalParticipant1, ParticipantEvidence component2)	Use UnambiguousParticipantEvidenceComparator to know if two experimental participants are equals.
int	compare(ParticipantEvidence experimentalParticipant1, ParticipantEvidence experimentalParticipant2)	It will first compares experimental roles using AbstractCvTermComparator.
UnambiguousExperimentalParticipantPoolComparator	getParticipantPoolComparator()	getParticipantPoolComparator

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface java.util.Comparator

equals, reversed, thenComparing, thenComparing, thenComparing, thenComparingDouble, thenComparingInt, thenComparingLong

Constructor Detail

UnambiguousParticipantEvidenceComparator

public UnambiguousParticipantEvidenceComparator()

Creates a new UnambiguousParticipantEvidenceComparator. It will use a UnambiguousParticipantBaseComparator to compare the basic properties of a participant, a UnambiguousCvTermComparator to compare experimental roles, preparations and identification methods and a UnambiguousOrganismComparator to compare expressed in organisms

Method Detail

getParticipantPoolComparator

public UnambiguousExperimentalParticipantPoolComparator getParticipantPoolComparator()

Description copied from class: ParticipantEvidenceComparator

getParticipantPoolComparator

Overrides:

getParticipantPoolComparator in class ParticipantEvidenceComparator

Returns:

a ExperimentalParticipantPoolComparator object.

compare

public int compare(ParticipantEvidence experimentalParticipant1,
                   ParticipantEvidence experimentalParticipant2)

Description copied from class: ParticipantEvidenceComparator

It will first compares experimental roles using AbstractCvTermComparator. If both experimental roles are equals, it will look at the identification methods using AbstractCvTermComparator. If both identification methods are equals, it will look at the experimental preparations using AbstractCvTermComparator. If both experimental preparations are equals, it will look at the expressed in organisms using OrganismComparator. If both organisms are the same, it will compare parameters using ParameterComparator

Specified by:

compare in interface Comparator<ParticipantEvidence>

Overrides:

compare in class ParticipantEvidenceComparator

Parameters:

experimentalParticipant1 - a ParticipantEvidence object.

experimentalParticipant2 - a ParticipantEvidence object.

Returns:

a int.

areEquals

public static boolean areEquals(ParticipantEvidence experimentalParticipant1,
                                ParticipantEvidence component2)

Use UnambiguousParticipantEvidenceComparator to know if two experimental participants are equals.

Parameters:

experimentalParticipant1 - a ParticipantEvidence object.

component2 - a ParticipantEvidence object.

Returns:

true if the two experimental participants are equal