Package psidev.psi.mi.jami.utils.comparator.participant

Class UnambiguousExperimentalParticipantPoolComparator

java.lang.Object

psidev.psi.mi.jami.utils.comparator.participant.ExperimentalParticipantPoolComparator

psidev.psi.mi.jami.utils.comparator.participant.UnambiguousExperimentalParticipantPoolComparator

All Implemented Interfaces:

Comparator<ExperimentalParticipantPool>

public class UnambiguousExperimentalParticipantPoolComparator
extends ExperimentalParticipantPoolComparator

Unambiguous Experimental participant pool comparator. It will first compares experimental roles using UnambiguousCvTermComparator. If both experimental roles are equals, it will look at the identification methods using UnambiguousCvTermComparator. If both identification methods are equals, it will look at the experimental preparations using UnambiguousCvTermComparator. If both experimental preparations are equals, it will look at the expressed in organisms using UnambiguousOrganismComparator.

Since:

18/01/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
UnambiguousExperimentalParticipantPoolComparator()	Creates a new UnambiguousExperimentalParticipantPoolComparator.

Method Summary

Modifier and Type	Method	Description
static boolean	areEquals(ExperimentalParticipantPool experimentalParticipant1, ExperimentalParticipantPool component2)	Use UnambiguousExactParticipantEvidenceComparator to know if two experimental participants are equals.
int	compare(ExperimentalParticipantPool experimentalParticipant1, ExperimentalParticipantPool experimentalParticipant2)	It will first compares experimental roles using UnambiguousCvTermComparator.
UnambiguousExperimentalEntityComparator	getExperimentalEntityComparator()	Getter for the field experimentalEntityComparator.
UnambiguousOrganismComparator	getOrganismComparator()	Getter for the field organismComparator.
UnambiguousParticipantBaseComparator	getParticipantBaseComparator()	Getter for the field participantBaseComparator.

Methods inherited from class psidev.psi.mi.jami.utils.comparator.participant.ExperimentalParticipantPoolComparator

getCvTermCollectionComparator, getFeatureCollectionComparator, getParameterCollectionComparator

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface java.util.Comparator

equals, reversed, thenComparing, thenComparing, thenComparing, thenComparingDouble, thenComparingInt, thenComparingLong

Constructor Detail

UnambiguousExperimentalParticipantPoolComparator

public UnambiguousExperimentalParticipantPoolComparator()

Creates a new UnambiguousExperimentalParticipantPoolComparator. It will use a UnambiguousParticipantBaseComparator to compare the basic properties of a participant, a UnambiguousCvTermComparator to compare experimental roles, preparations and identification methods and a UnambiguousOrganismComparator to compare expressed in organisms

Method Detail

getParticipantBaseComparator

public UnambiguousParticipantBaseComparator getParticipantBaseComparator()

Getter for the field participantBaseComparator.

Overrides:

getParticipantBaseComparator in class ExperimentalParticipantPoolComparator

Returns:

a ParticipantBaseComparator object.

getOrganismComparator

public UnambiguousOrganismComparator getOrganismComparator()

Getter for the field organismComparator.

Overrides:

getOrganismComparator in class ExperimentalParticipantPoolComparator

Returns:

a OrganismComparator object.

getExperimentalEntityComparator

public UnambiguousExperimentalEntityComparator getExperimentalEntityComparator()

Description copied from class: ExperimentalParticipantPoolComparator

Getter for the field experimentalEntityComparator.

Overrides:

getExperimentalEntityComparator in class ExperimentalParticipantPoolComparator

Returns:

a Comparator object.

compare

public int compare(ExperimentalParticipantPool experimentalParticipant1,
                   ExperimentalParticipantPool experimentalParticipant2)

It will first compares experimental roles using UnambiguousCvTermComparator. If both experimental roles are equals, it will look at the identification methods using UnambiguousCvTermComparator. If both identification methods are equals, it will look at the experimental preparations using UnambiguousCvTermComparator. If both experimental preparations are equals, it will look at the expressed in organisms using UnambiguousOrganismComparator.

Specified by:

compare in interface Comparator<ExperimentalParticipantPool>

Overrides:

compare in class ExperimentalParticipantPoolComparator

Parameters:

experimentalParticipant1 - a ExperimentalParticipantPool object.

experimentalParticipant2 - a ExperimentalParticipantPool object.

Returns:

a int.

areEquals

public static boolean areEquals(ExperimentalParticipantPool experimentalParticipant1,
                                ExperimentalParticipantPool component2)

Use UnambiguousExactParticipantEvidenceComparator to know if two experimental participants are equals.

Parameters:

experimentalParticipant1 - a ExperimentalParticipantPool object.

component2 - a ExperimentalParticipantPool object.

Returns:

true if the two experimental participants are equal