Package psidev.psi.mi.jami.xml.io.parser

Class XmlModelledParser

java.lang.Object

psidev.psi.mi.jami.xml.io.parser.AbstractPsiXmlParser<ModelledInteraction>

psidev.psi.mi.jami.xml.io.parser.XmlModelledParser

All Implemented Interfaces:

PsiXmlParser<ModelledInteraction>

public class XmlModelledParser
extends AbstractPsiXmlParser<ModelledInteraction>

Parser generating modelled interaction objects and ignore experimental details

Since:

16/10/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
XmlModelledParser(File file)	Constructor for XmlModelledParser.
XmlModelledParser(InputStream inputStream)	Constructor for XmlModelledParser.
XmlModelledParser(Reader reader)	Constructor for XmlModelledParser.
XmlModelledParser(URL url)	Constructor for XmlModelledParser.

Method Summary

Modifier and Type	Method	Description
protected javax.xml.bind.Unmarshaller	createJAXBUnmarshaller()	createJAXBUnmarshaller.
protected void	parseAvailabilityList(XmlEntryContext entryContext)	parseAvailabilityList.

Methods inherited from class psidev.psi.mi.jami.xml.io.parser.AbstractPsiXmlParser

close, containsUnresolvedReferences, createPsiXmlExceptionFrom, getCurrentElement, getInteractorFactory, getListener, getNextPsiXmlStartElement, getStreamReader, getVersion, hasFinished, loadEntry, parseAttributeList, parseExperimentList, parseInteractionList, parseInteractionTag, parseInteractorList, parseNextInteraction, parseNextPreLoadedInteraction, parseSource, processAvailabilityList, processEntry, processEntryAndLoadNextInteraction, processUnexpectedNode, reInit, setCacheOfObjects, setCurrentElement, setInteractorFactory, setListener, skipNextElement, unmarshallInteraction

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

XmlModelledParser

public XmlModelledParser(File file)

Constructor for XmlModelledParser.

Parameters:

file - a File object.

XmlModelledParser

public XmlModelledParser(InputStream inputStream)

Constructor for XmlModelledParser.

Parameters:

inputStream - a InputStream object.

XmlModelledParser

public XmlModelledParser(URL url)

Constructor for XmlModelledParser.

Parameters:

url - a URL object.

XmlModelledParser

public XmlModelledParser(Reader reader)

Constructor for XmlModelledParser.

Parameters:

reader - a Reader object.

Method Detail

createJAXBUnmarshaller

protected javax.xml.bind.Unmarshaller createJAXBUnmarshaller()
                                                      throws javax.xml.bind.JAXBException

createJAXBUnmarshaller.

Specified by:

createJAXBUnmarshaller in class AbstractPsiXmlParser<ModelledInteraction>

Returns:

the unmarshaller with the class context

Throws:

javax.xml.bind.JAXBException - if any.

parseAvailabilityList

protected void parseAvailabilityList(XmlEntryContext entryContext)
                              throws PsiXmlParserException

parseAvailabilityList.

Overrides:

parseAvailabilityList in class AbstractPsiXmlParser<ModelledInteraction>

Parameters:

entryContext - a XmlEntryContext object.

Throws:

PsiXmlParserException - if any.