Package psidev.psi.mi.jami.xml.model.extension.xml300

Class XmlExperiment

java.lang.Object

psidev.psi.mi.jami.xml.model.extension.xml300.AbstractXmlExperiment

psidev.psi.mi.jami.xml.model.extension.xml300.XmlExperiment

All Implemented Interfaces:

com.sun.xml.bind.Locatable, FileSourceContext, Experiment, NamedExperiment, ExtendedPsiXmlExperiment

public class XmlExperiment
extends AbstractXmlExperiment

Xml 3.0 implementation of experiment

Since:

25/07/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Nested Class Summary

Nested classes/interfaces inherited from class psidev.psi.mi.jami.xml.model.extension.xml300.AbstractXmlExperiment

AbstractXmlExperiment.JAXBAttributeWrapper, AbstractXmlExperiment.JAXBConfidenceWrapper, AbstractXmlExperiment.JAXBHostOrganismWrapper, AbstractXmlExperiment.JAXBVariableParameterWrapper

Field Summary

Fields inherited from class psidev.psi.mi.jami.xml.model.extension.xml300.AbstractXmlExperiment

locator

Fields inherited from interface psidev.psi.mi.jami.model.Experiment

INFERRED_BY_CURATOR, INFERRED_BY_CURATOR_MI, UNSPECIFIED_METHOD, UNSPECIFIED_METHOD_MI

Constructor Summary

Constructors

Constructor	Description
XmlExperiment()	Constructor for XmlExperiment.
XmlExperiment(Publication publication)	Constructor for XmlExperiment.
XmlExperiment(Publication publication, CvTerm interactionDetectionMethod)	Constructor for XmlExperiment.
XmlExperiment(Publication publication, CvTerm interactionDetectionMethod, Organism organism)	Constructor for XmlExperiment.

Method Summary

Modifier and Type	Method	Description
protected void	initialiseFullNameFromPublication(BibRef publication)	initialiseFullNameFromPublication.

Methods inherited from class psidev.psi.mi.jami.xml.model.extension.xml300.AbstractXmlExperiment

addAllInteractionEvidences, addAllVariableParameters, addInteractionEvidence, addVariableParameter, getAliases, getAnnotations, getConfidences, getExperimentNamesContainer, getFeatureDetectionMethod, getFullName, getHostOrganism, getHostOrganisms, getId, getInteractionDetectionMethod, getInteractionEvidences, getParticipantIdentificationMethod, getPublication, getShortName, getSourceLocator, getVariableParameters, getXrefs, initialiseAnnotationWrapper, initialiseConfidenceWrapper, initialiseInteractions, initialiseVariableParameters, removeAllInteractionEvidences, removeAllVariableParameters, removeInteractionEvidence, removeVariableParameter, setExperimentNamesContainer, setExperimentXrefContainer, setFeatureDetectionMethod, setFullName, setHostOrganism, setId, setInteractionDetectionMethod, setJAXBAttributeWrapper, setJAXBConfidenceWrapper, setJAXBHostOrganismWrapper, setJAXBId, setJAXBInteractionDetectionMethod, setJAXBPublication, setJAXBVariableParameterValuesWrapper, setParticipantIdentificationMethod, setPublication, setPublicationAndAddExperiment, setShortName, setSourceLocator, sourceLocation, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

XmlExperiment

public XmlExperiment()

Constructor for XmlExperiment.

XmlExperiment

public XmlExperiment(Publication publication)

Constructor for XmlExperiment.

Parameters:

publication - a Publication object.

XmlExperiment

public XmlExperiment(Publication publication,
                     CvTerm interactionDetectionMethod)

Constructor for XmlExperiment.

Parameters:

publication - a Publication object.

interactionDetectionMethod - a CvTerm object.

XmlExperiment

public XmlExperiment(Publication publication,
                     CvTerm interactionDetectionMethod,
                     Organism organism)

Constructor for XmlExperiment.

Parameters:

publication - a Publication object.

interactionDetectionMethod - a CvTerm object.

organism - a Organism object.

Method Detail

initialiseFullNameFromPublication

protected void initialiseFullNameFromPublication(BibRef publication)

initialiseFullNameFromPublication.

Specified by:

initialiseFullNameFromPublication in class AbstractXmlExperiment

Parameters:

publication - a BibRef object.