Package psidev.psi.mi.jami.xml.model.extension.datasource

Class XmlBinaryEvidenceStreamSource

java.lang.Object

psidev.psi.mi.jami.xml.model.extension.datasource.AbstractPsiXmlStream<B>

psidev.psi.mi.jami.xml.model.extension.datasource.AbstractPsiXmlBinaryStream<InteractionEvidence,BinaryInteractionEvidence>

psidev.psi.mi.jami.xml.model.extension.datasource.XmlBinaryEvidenceStreamSource

All Implemented Interfaces:

ErrorHandler, BinaryInteractionEvidenceStream, BinaryInteractionStream<BinaryInteractionEvidence>, InteractionEvidenceStream<BinaryInteractionEvidence>, InteractionStream<BinaryInteractionEvidence>, MIDataSource, MIFileDataSource, MIFileParserListener, PsiXmlParserListener, PsiXmlStreamSource<BinaryInteractionEvidence>

public class XmlBinaryEvidenceStreamSource
extends AbstractPsiXmlBinaryStream<InteractionEvidence,BinaryInteractionEvidence>
implements BinaryInteractionEvidenceStream

PsiXml datasource for binaryInteractionEvidence

Since:

17/10/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Field Summary

Fields inherited from class psidev.psi.mi.jami.xml.model.extension.datasource.AbstractPsiXmlStream

SCHEMA_FEATURE, VALIDATION_FEATURE

Fields inherited from interface psidev.psi.mi.jami.datasource.MIFileDataSource

FILE_URI_PREFIX, URL_PREFIX_REGEXP

Constructor Summary

Constructors

Constructor	Description
XmlBinaryEvidenceStreamSource()	Constructor for XmlBinaryEvidenceStreamSource.
XmlBinaryEvidenceStreamSource(File file)	Constructor for XmlBinaryEvidenceStreamSource.
XmlBinaryEvidenceStreamSource(InputStream input)	Constructor for XmlBinaryEvidenceStreamSource.
XmlBinaryEvidenceStreamSource(Reader reader)	Constructor for XmlBinaryEvidenceStreamSource.
XmlBinaryEvidenceStreamSource(URL url)	Constructor for XmlBinaryEvidenceStreamSource.

Method Summary

Modifier and Type	Method	Description
protected Iterator<BinaryInteractionEvidence>	createXmlIterator()	createXmlIterator.
protected void	initialiseXmlParser(File file)	initialiseXmlParser.
protected void	initialiseXmlParser(InputStream input)	initialiseXmlParser.
protected void	initialiseXmlParser(Reader reader)	initialiseXmlParser.
protected void	initialiseXmlParser(URL url)	initialiseXmlParser.

Methods inherited from class psidev.psi.mi.jami.xml.model.extension.datasource.AbstractPsiXmlBinaryStream

getComplexExpansion, initialiseExpansionMethod

Methods inherited from class psidev.psi.mi.jami.xml.model.extension.datasource.AbstractPsiXmlStream

close, error, fatalError, getElementCache, getFileParserListener, getInteractionsIterator, getInteractorFactory, getParser, initialiseContext, isInitialised, onAliasWithoutName, onAnnotationWithoutTopic, onInteractionWithoutParticipants, onInvalidOrganismTaxid, onInvalidPosition, onInvalidRange, onInvalidStoichiometry, onInvalidSyntax, onMissingChecksumMethod, onMissingChecksumValue, onMissingConfidenceType, onMissingConfidenceValue, onMissingCvTermName, onMissingInteractorName, onMissingParameterType, onMissingParameterValue, onParticipantWithoutInteractor, onSeveralExperimentalRolesFound, onSeveralExperimentsFound, onSeveralExpressedInOrganismFound, onSeveralHostOrganismFound, onSyntaxWarning, onUnresolvedReference, onXrefWithoutDatabase, onXrefWithoutId, reInit, reset, setFileParserListener, setInteractorFactory, setMIFileParserListener, setParser, setXmlFileParserListener, validateSyntax, validateSyntax, warning

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface psidev.psi.mi.jami.datasource.InteractionStream

getInteractionsIterator

Methods inherited from interface psidev.psi.mi.jami.datasource.MIDataSource

close, initialiseContext, reset

Constructor Detail

XmlBinaryEvidenceStreamSource

public XmlBinaryEvidenceStreamSource()

Constructor for XmlBinaryEvidenceStreamSource.

XmlBinaryEvidenceStreamSource

public XmlBinaryEvidenceStreamSource(File file)

Constructor for XmlBinaryEvidenceStreamSource.

Parameters:

file - a File object.

XmlBinaryEvidenceStreamSource

public XmlBinaryEvidenceStreamSource(InputStream input)

Constructor for XmlBinaryEvidenceStreamSource.

Parameters:

input - a InputStream object.

XmlBinaryEvidenceStreamSource

public XmlBinaryEvidenceStreamSource(Reader reader)

Constructor for XmlBinaryEvidenceStreamSource.

Parameters:

reader - a Reader object.

XmlBinaryEvidenceStreamSource

public XmlBinaryEvidenceStreamSource(URL url)

Constructor for XmlBinaryEvidenceStreamSource.

Parameters:

url - a URL object.

Method Detail

initialiseXmlParser

protected void initialiseXmlParser(Reader reader)

initialiseXmlParser.

Specified by:

initialiseXmlParser in class AbstractPsiXmlStream<BinaryInteractionEvidence>

Parameters:

reader - a Reader object.

initialiseXmlParser

protected void initialiseXmlParser(File file)

initialiseXmlParser.

Specified by:

initialiseXmlParser in class AbstractPsiXmlStream<BinaryInteractionEvidence>

Parameters:

file - a File object.

initialiseXmlParser

protected void initialiseXmlParser(InputStream input)

initialiseXmlParser.

Specified by:

initialiseXmlParser in class AbstractPsiXmlStream<BinaryInteractionEvidence>

Parameters:

input - a InputStream object.

initialiseXmlParser

protected void initialiseXmlParser(URL url)

initialiseXmlParser.

Specified by:

initialiseXmlParser in class AbstractPsiXmlStream<BinaryInteractionEvidence>

Parameters:

url - a URL object.

createXmlIterator

protected Iterator<BinaryInteractionEvidence> createXmlIterator()

createXmlIterator.

Specified by:

createXmlIterator in class AbstractPsiXmlStream<BinaryInteractionEvidence>

Returns:

a Iterator object.