Package psidev.psi.mi.jami.xml.model.extension.xml300

Class XmlOpenCvTerm

java.lang.Object

psidev.psi.mi.jami.xml.model.extension.xml300.AbstractXmlCvTerm

psidev.psi.mi.jami.xml.model.extension.xml300.XmlOpenCvTerm

All Implemented Interfaces:

com.sun.xml.bind.Locatable, FileSourceContext, CvTerm

public class XmlOpenCvTerm
extends AbstractXmlCvTerm

Xml implementation of CvTerm. Does write annotations The JAXB binding is designed to be read-only and is not designed for writing

Since:

18/07/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Nested Class Summary

Nested classes/interfaces inherited from class psidev.psi.mi.jami.xml.model.extension.xml300.AbstractXmlCvTerm

AbstractXmlCvTerm.JAXBAttributeWrapper

Field Summary

Fields inherited from interface psidev.psi.mi.jami.model.CvTerm

PSI_MI, PSI_MI_MI, PSI_MOD, PSI_MOD_MI, PSI_PAR

Constructor Summary

Constructors

Constructor	Description
XmlOpenCvTerm()	Constructor for XmlOpenCvTerm.
XmlOpenCvTerm(String shortName)	Constructor for XmlOpenCvTerm.
XmlOpenCvTerm(String shortName, String miIdentifier)	Constructor for XmlOpenCvTerm.
XmlOpenCvTerm(String shortName, String fullName, String miIdentifier)	Constructor for XmlOpenCvTerm.
XmlOpenCvTerm(String shortName, String fullName, Xref ontologyId)	Constructor for XmlOpenCvTerm.
XmlOpenCvTerm(String shortName, Xref ontologyId)	Constructor for XmlOpenCvTerm.

Method Summary

Modifier and Type	Method	Description
FileSourceLocator	getSourceLocator()	Getter for the field sourceLocator.
void	setJAXBAttributeWrapper(AbstractXmlCvTerm.JAXBAttributeWrapper wrapper)	setJAXBAttributeWrapper.
void	setJAXBNames(NamesContainer value)	setJAXBNames.
void	setJAXBXref(CvTermXrefContainer value)	setJAXBXref.
String	toString()	toString

Methods inherited from class psidev.psi.mi.jami.xml.model.extension.xml300.AbstractXmlCvTerm

equals, getAnnotations, getAttributeWrapper, getFullName, getIdentifiers, getMIIdentifier, getMODIdentifier, getNamesContainer, getPARIdentifier, getShortName, getSynonyms, getXrefContainer, getXrefs, hashCode, initialiseAnnotationWrapper, setAttributeWrapper, setFullName, setMIIdentifier, setMODIdentifier, setPARIdentifier, setShortName, setSourceLocator, sourceLocation

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Constructor Detail

XmlOpenCvTerm

public XmlOpenCvTerm()

Constructor for XmlOpenCvTerm.

XmlOpenCvTerm

public XmlOpenCvTerm(String shortName)

Constructor for XmlOpenCvTerm.

Parameters:

shortName - a String object.

XmlOpenCvTerm

public XmlOpenCvTerm(String shortName,
                     String miIdentifier)

Constructor for XmlOpenCvTerm.

Parameters:

shortName - a String object.

miIdentifier - a String object.

XmlOpenCvTerm

public XmlOpenCvTerm(String shortName,
                     String fullName,
                     String miIdentifier)

Constructor for XmlOpenCvTerm.

Parameters:

shortName - a String object.

fullName - a String object.

miIdentifier - a String object.

XmlOpenCvTerm

public XmlOpenCvTerm(String shortName,
                     Xref ontologyId)

Constructor for XmlOpenCvTerm.

Parameters:

shortName - a String object.

ontologyId - a Xref object.

XmlOpenCvTerm

public XmlOpenCvTerm(String shortName,
                     String fullName,
                     Xref ontologyId)

Constructor for XmlOpenCvTerm.

Parameters:

shortName - a String object.

fullName - a String object.

ontologyId - a Xref object.

Method Detail

setJAXBNames

public void setJAXBNames(NamesContainer value)

setJAXBNames.

Sets the value of the names property.

Overrides:

setJAXBNames in class AbstractXmlCvTerm

Parameters:

value - a NamesContainer object.

setJAXBXref

public void setJAXBXref(CvTermXrefContainer value)

setJAXBXref.

Sets the value of the xrefContainer property.

Overrides:

setJAXBXref in class AbstractXmlCvTerm

Parameters:

value - a CvTermXrefContainer object.

setJAXBAttributeWrapper

public void setJAXBAttributeWrapper(AbstractXmlCvTerm.JAXBAttributeWrapper wrapper)

setJAXBAttributeWrapper.

Parameters:

wrapper - a JAXBAttributeWrapper object.

getSourceLocator

public FileSourceLocator getSourceLocator()

Getter for the field sourceLocator.

Specified by:

getSourceLocator in interface FileSourceContext

Overrides:

getSourceLocator in class AbstractXmlCvTerm

Returns:

a FileSourceLocator object.

toString

public String toString()

toString

Specified by:

toString in interface FileSourceContext

Overrides:

toString in class AbstractXmlCvTerm

Returns:

the file source context as a String. If the source locator is not null, it should give the source locator properties