Package psidev.psi.mi.jami.xml.model.extension.xml300

Class XmlRange

java.lang.Object

psidev.psi.mi.jami.xml.model.extension.xml300.XmlRange

All Implemented Interfaces:

com.sun.xml.bind.Locatable, FileSourceContext, Range

public class XmlRange
extends Object
implements Range, FileSourceContext, com.sun.xml.bind.Locatable

Xml implementation of Range The JAXB binding is designed to be read-only and is not designed for writing

Since:

19/07/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Field Summary

Fields inherited from interface psidev.psi.mi.jami.model.Range

C_TERMINAL_POSITION_SYMBOL, FUZZY_POSITION_SYMBOL, GREATER_THAN_POSITION_SYMBOL, LESS_THAN_POSITION_SYMBOL, N_TERMINAL_POSITION_SYMBOL, POSITION_SEPARATOR, UNDETERMINED_POSITION_SYMBOL

Constructor Summary

Constructors

Constructor	Description
XmlRange()	Constructor for XmlRange.
XmlRange(Position start, Position end)	Constructor for XmlRange.
XmlRange(Position start, Position end, boolean isLink)	Constructor for XmlRange.
XmlRange(Position start, Position end, boolean isLink, Participant participant)	Constructor for XmlRange.
XmlRange(Position start, Position end, boolean isLink, ResultingSequence resultingSequence)	Constructor for XmlRange.
XmlRange(Position start, Position end, Participant participant)	Constructor for XmlRange.
XmlRange(Position start, Position end, ResultingSequence resultingSequence)	Constructor for XmlRange.

Method Summary

Modifier and Type	Method	Description
boolean	equals(Object o)
Position	getEnd()	Getter for the field end.
Entity	getParticipant()	Getter for the field participant.
ResultingSequence	getResultingSequence()	Getter for the field resultingSequence.
FileSourceLocator	getSourceLocator()	Getter for the field sourceLocator.
Position	getStart()	Getter for the field start.
int	hashCode()
boolean	isLink()	Gets the value of the isLink property.
void	setJAXBBeginInterval(XmlInterval value)	Sets the value of the beginInterval property.
void	setJAXBBeginPosition(XmlPosition value)	Sets the value of the begin property.
void	setJAXBEndInterval(XmlInterval value)	Sets the value of the endInterval property.
void	setJAXBEndPosition(XmlPosition value)	Sets the value of the end property.
void	setJAXBEndStatus(XmlCvTerm value)	Sets the value of the endStatus property.
void	setJAXBLink(boolean link)	setJAXBLink.
void	setJAXBParticipantRef(int id)	setJAXBParticipantRef.
void	setJAXBParticipantRef(int id, PsiXmlLocator locator)	setJAXBParticipantRef.
void	setJAXBResultingSequence(XmlResultingSequence resultingSequence)	setJAXBResultingSequence.
void	setJAXBStartStatus(XmlCvTerm value)	Sets the value of the startStatus property.
void	setLink(boolean link)	Sets the link boolean for this Range
void	setParticipant(Entity participant)	Sets the participating molecule that the range refers to
void	setPositions(Position start, Position end)	Set the positions of the feature range in the interactor sequence
void	setResultingSequence(ResultingSequence resultingSequence)	Sets the resultingSequence of this range object
void	setSourceLocator(FileSourceLocator sourceLocator)	Sets the source locator
Locator	sourceLocation()
String	toString()	toString

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Constructor Detail

XmlRange

public XmlRange()

Constructor for XmlRange.

XmlRange

public XmlRange(Position start,
                Position end)

Constructor for XmlRange.

Parameters:

start - a Position object.

end - a Position object.

XmlRange

public XmlRange(Position start,
                Position end,
                boolean isLink)

Constructor for XmlRange.

Parameters:

start - a Position object.

end - a Position object.

isLink - a boolean.

XmlRange

public XmlRange(Position start,
                Position end,
                ResultingSequence resultingSequence)

Constructor for XmlRange.

Parameters:

start - a Position object.

end - a Position object.

resultingSequence - a ResultingSequence object.

XmlRange

public XmlRange(Position start,
                Position end,
                boolean isLink,
                ResultingSequence resultingSequence)

Constructor for XmlRange.

Parameters:

start - a Position object.

end - a Position object.

isLink - a boolean.

resultingSequence - a ResultingSequence object.

XmlRange

public XmlRange(Position start,
                Position end,
                Participant participant)

Constructor for XmlRange.

Parameters:

start - a Position object.

end - a Position object.

participant - a Participant object.

XmlRange

public XmlRange(Position start,
                Position end,
                boolean isLink,
                Participant participant)

Constructor for XmlRange.

Parameters:

start - a Position object.

end - a Position object.

isLink - a boolean.

participant - a Participant object.

Method Detail

getStart

public Position getStart()

Getter for the field start.

Specified by:

getStart in interface Range

Returns:

a Position object.

getEnd

public Position getEnd()

Getter for the field end.

Specified by:

getEnd in interface Range

Returns:

a Position object.

isLink

public boolean isLink()

Gets the value of the isLink property.

Specified by:

isLink in interface Range

Returns:

a boolean.

setLink

public void setLink(boolean link)

Sets the link boolean for this Range

Specified by:

setLink in interface Range

Parameters:

link - : the linked value

setJAXBStartStatus

public void setJAXBStartStatus(XmlCvTerm value)

Sets the value of the startStatus property.

Parameters:

value - allowed object is XmlCvTerm

setJAXBBeginInterval

public void setJAXBBeginInterval(XmlInterval value)

Sets the value of the beginInterval property.

Parameters:

value - allowed object is XmlInterval

setJAXBBeginPosition

public void setJAXBBeginPosition(XmlPosition value)

Sets the value of the begin property.

Parameters:

value - allowed object is Position

setJAXBEndStatus

public void setJAXBEndStatus(XmlCvTerm value)

Sets the value of the endStatus property.

Parameters:

value - allowed object is XmlCvTerm

setJAXBEndInterval

public void setJAXBEndInterval(XmlInterval value)

Sets the value of the endInterval property.

Parameters:

value - allowed object is XmlInterval

setJAXBEndPosition

public void setJAXBEndPosition(XmlPosition value)

Sets the value of the end property.

Parameters:

value - allowed object is XmlPosition

setJAXBLink

public void setJAXBLink(boolean link)

setJAXBLink.

Parameters:

link - a boolean.

setPositions

public void setPositions(Position start,
                         Position end)

Set the positions of the feature range in the interactor sequence

Specified by:

setPositions in interface Range

Parameters:

start - : start position

end - : end position

getResultingSequence

public ResultingSequence getResultingSequence()

Getter for the field resultingSequence.

Specified by:

getResultingSequence in interface Range

Returns:

a ResultingSequence object.

setResultingSequence

public void setResultingSequence(ResultingSequence resultingSequence)

Sets the resultingSequence of this range object

Specified by:

setResultingSequence in interface Range

Parameters:

resultingSequence - : the resulting sequence

getParticipant

public Entity getParticipant()

Getter for the field participant.

Specified by:

getParticipant in interface Range

Returns:

a Entity object.

setParticipant

public void setParticipant(Entity participant)

Sets the participating molecule that the range refers to

Specified by:

setParticipant in interface Range

Parameters:

participant - a Entity object.

setJAXBResultingSequence

public void setJAXBResultingSequence(XmlResultingSequence resultingSequence)

setJAXBResultingSequence.

Parameters:

resultingSequence - a XmlResultingSequence object.

setJAXBParticipantRef

public void setJAXBParticipantRef(int id,
                                  PsiXmlLocator locator)

setJAXBParticipantRef.

Parameters:

id - a int.

locator - a PsiXmlLocator object.

setJAXBParticipantRef

public void setJAXBParticipantRef(int id)

setJAXBParticipantRef.

Parameters:

id - a int.

sourceLocation

public Locator sourceLocation()

Specified by:

sourceLocation in interface com.sun.xml.bind.Locatable

getSourceLocator

public FileSourceLocator getSourceLocator()

Getter for the field sourceLocator.

Specified by:

getSourceLocator in interface FileSourceContext

Returns:

a FileSourceLocator object.

setSourceLocator

public void setSourceLocator(FileSourceLocator sourceLocator)

Sets the source locator

Specified by:

setSourceLocator in interface FileSourceContext

Parameters:

sourceLocator - : the file locator

equals

public boolean equals(Object o)

Overrides:

equals in class Object

hashCode

public int hashCode()

Overrides:

hashCode in class Object

toString

public String toString()

toString

Specified by:

toString in interface FileSourceContext

Overrides:

toString in class Object

Returns:

the file source context as a String. If the source locator is not null, it should give the source locator properties