Package psidev.psi.mi.jami.enricher.impl.full

Class FullExperimentalParticipantPoolUpdater

java.lang.Object

psidev.psi.mi.jami.enricher.impl.minimal.MinimalEntityEnricher<P,F>

psidev.psi.mi.jami.enricher.impl.minimal.MinimalParticipantEnricher<P,FeatureEvidence>

psidev.psi.mi.jami.enricher.impl.minimal.MinimalParticipantEvidenceEnricher<P>

psidev.psi.mi.jami.enricher.impl.full.FullParticipantEvidenceEnricher<P>

psidev.psi.mi.jami.enricher.impl.full.FullParticipantEvidenceUpdater<ExperimentalParticipantPool>

psidev.psi.mi.jami.enricher.impl.full.FullExperimentalParticipantPoolUpdater

All Implemented Interfaces:

EntityEnricher<ExperimentalParticipantPool,FeatureEvidence>, ExperimentalParticipantPoolEnricher, MIEnricher<ExperimentalParticipantPool>, ParticipantEnricher<ExperimentalParticipantPool,FeatureEvidence>, ParticipantEvidenceEnricher<ExperimentalParticipantPool>, ParticipantPoolEnricher<ExperimentalParticipantPool,FeatureEvidence>

public class FullExperimentalParticipantPoolUpdater
extends FullParticipantEvidenceUpdater<ExperimentalParticipantPool>
implements ExperimentalParticipantPoolEnricher

The participant pool enricher is an enricher which can enrich either single participant or a collection. The participant enricher has subEnrichers and no fetchers.

Since:

19/06/13

Author:

Gabriel Aldam (galdam@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
FullExperimentalParticipantPoolUpdater()

Method Summary

Modifier and Type	Method	Description
CompositeEntityEnricher	getParticipantCandidateEnricher()	getParticipantCandidateEnricher.
void	processOtherProperties(ExperimentalParticipantPool objectToEnrich, ExperimentalParticipantPool objectSource)	processOtherProperties.
protected void	processParticipantCandidates(ExperimentalParticipantPool objectToEnrich, ExperimentalParticipantPool objectSource)	processParticipantCandidates.
void	setParticipantCandidateEnricher(CompositeEntityEnricher entityEnricher)	setParticipantCandidateEnricher.

Methods inherited from class psidev.psi.mi.jami.enricher.impl.full.FullParticipantEvidenceUpdater

getCvTermEnricher, getFeatureEnricher, getInteractorEnricher, getMinimalUpdater, getParticipantEnricherListener, processAliases, processBiologicalRole, processConfidences, processExperimentalPreparations, processExperimentalRole, processFeatures, processIdentificationMethods, processInteractor, processParameters, processXrefs, setCvTermEnricher, setFeatureEnricher, setInteractorEnricher, setParticipantEnricherListener

Methods inherited from class psidev.psi.mi.jami.enricher.impl.full.FullParticipantEvidenceEnricher

mergeExperimentalPreparations, processExperimentalPreparations, processOtherProperties

Methods inherited from class psidev.psi.mi.jami.enricher.impl.minimal.MinimalParticipantEvidenceEnricher

getOrganismEnricher, mergeIdentificationMethods, processExperimentalRole, processExpressedInOrganism, processExpressedInOrganism, processIdentificationMethods, setOrganismEnricher

Methods inherited from class psidev.psi.mi.jami.enricher.impl.minimal.MinimalParticipantEnricher

enrich, processBiologicalRole

Methods inherited from class psidev.psi.mi.jami.enricher.impl.minimal.MinimalEntityEnricher

enrich, enrich, processFeatures, processInteractor

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface psidev.psi.mi.jami.enricher.EntityEnricher

getFeatureEnricher, getInteractorEnricher, getParticipantEnricherListener, setFeatureEnricher, setInteractorEnricher, setParticipantEnricherListener

Methods inherited from interface psidev.psi.mi.jami.enricher.MIEnricher

enrich, enrich, enrich

Methods inherited from interface psidev.psi.mi.jami.enricher.ParticipantEnricher

getCvTermEnricher, setCvTermEnricher

Methods inherited from interface psidev.psi.mi.jami.enricher.ParticipantEvidenceEnricher

getOrganismEnricher, setOrganismEnricher

Constructor Detail

FullExperimentalParticipantPoolUpdater

public FullExperimentalParticipantPoolUpdater()

Method Detail

processOtherProperties

public void processOtherProperties(ExperimentalParticipantPool objectToEnrich,
                                   ExperimentalParticipantPool objectSource)
                            throws EnricherException

processOtherProperties.

Overrides:

processOtherProperties in class FullParticipantEvidenceEnricher<ExperimentalParticipantPool>

Parameters:

objectToEnrich - a P object.

objectSource - a P object.

Throws:

EnricherException - if any.

processParticipantCandidates

protected void processParticipantCandidates(ExperimentalParticipantPool objectToEnrich,
                                            ExperimentalParticipantPool objectSource)
                                     throws EnricherException

processParticipantCandidates.

Parameters:

objectToEnrich - a ExperimentalParticipantPool object.

objectSource - a ExperimentalParticipantPool object.

Throws:

EnricherException - if any.

getParticipantCandidateEnricher

public CompositeEntityEnricher getParticipantCandidateEnricher()

getParticipantCandidateEnricher.

Specified by:

getParticipantCandidateEnricher in interface ParticipantPoolEnricher<ExperimentalParticipantPool,FeatureEvidence>

Returns:

a CompositeEntityEnricher object.

setParticipantCandidateEnricher

public void setParticipantCandidateEnricher(CompositeEntityEnricher entityEnricher)

setParticipantCandidateEnricher.

Specified by:

setParticipantCandidateEnricher in interface ParticipantPoolEnricher<ExperimentalParticipantPool,FeatureEvidence>

Parameters:

entityEnricher - a CompositeEntityEnricher object.