Package psidev.psi.mi.jami.enricher.impl.full

Class FullParticipantEvidenceEnricher<P extends ParticipantEvidence>

java.lang.Object

psidev.psi.mi.jami.enricher.impl.minimal.MinimalEntityEnricher<P,F>

psidev.psi.mi.jami.enricher.impl.minimal.MinimalParticipantEnricher<P,FeatureEvidence>

psidev.psi.mi.jami.enricher.impl.minimal.MinimalParticipantEvidenceEnricher<P>

psidev.psi.mi.jami.enricher.impl.full.FullParticipantEvidenceEnricher<P>

All Implemented Interfaces:

EntityEnricher<P,FeatureEvidence>, MIEnricher<P>, ParticipantEnricher<P,FeatureEvidence>, ParticipantEvidenceEnricher<P>

Direct Known Subclasses:

FullExperimentalParticipantPoolEnricher, FullParticipantEvidenceUpdater

public class FullParticipantEvidenceEnricher<P extends ParticipantEvidence>
extends MinimalParticipantEvidenceEnricher<P>

Created with IntelliJ IDEA.

Since:

28/06/13

Author:

Gabriel Aldam (galdam@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
FullParticipantEvidenceEnricher()

Method Summary

Modifier and Type	Method	Description
protected void	mergeExperimentalPreparations(P termToEnrich, Collection<CvTerm> toEnrichTerms, Collection<CvTerm> fetchedTerms, boolean remove)	mergeExperimentalPreparations.
protected void	processConfidences(P participantEvidenceToEnrich, P objectSource)	processConfidences.
protected void	processExperimentalPreparations(P participantEvidenceToEnrich)	processExperimentalPreparations.
protected void	processExperimentalPreparations(P participantEvidenceToEnrich, P objectSource)	processExperimentalPreparations.
void	processOtherProperties(P participantEvidenceToEnrich)	processOtherProperties.
void	processOtherProperties(P participantEvidenceToEnrich, P objectSource)	processOtherProperties.
protected void	processParameters(P participantEvidenceToEnrich, P objectSource)	processParameters.
protected void	processXrefs(P participantEvidenceToEnrich, P objectSource)	processXrefs.

Methods inherited from class psidev.psi.mi.jami.enricher.impl.minimal.MinimalParticipantEvidenceEnricher

getOrganismEnricher, mergeIdentificationMethods, processExperimentalRole, processExperimentalRole, processExpressedInOrganism, processExpressedInOrganism, processIdentificationMethods, processIdentificationMethods, setOrganismEnricher

Methods inherited from class psidev.psi.mi.jami.enricher.impl.minimal.MinimalParticipantEnricher

enrich, getCvTermEnricher, processAliases, processBiologicalRole, processBiologicalRole, processInteractor, setCvTermEnricher

Methods inherited from class psidev.psi.mi.jami.enricher.impl.minimal.MinimalEntityEnricher

enrich, enrich, getFeatureEnricher, getInteractorEnricher, getParticipantEnricherListener, processFeatures, processFeatures, processInteractor, setFeatureEnricher, setInteractorEnricher, setParticipantEnricherListener

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface psidev.psi.mi.jami.enricher.EntityEnricher

getFeatureEnricher, getInteractorEnricher, getParticipantEnricherListener, setFeatureEnricher, setInteractorEnricher, setParticipantEnricherListener

Methods inherited from interface psidev.psi.mi.jami.enricher.MIEnricher

enrich, enrich, enrich

Methods inherited from interface psidev.psi.mi.jami.enricher.ParticipantEnricher

getCvTermEnricher, setCvTermEnricher

Constructor Detail

FullParticipantEvidenceEnricher

public FullParticipantEvidenceEnricher()

Method Detail

processOtherProperties

public void processOtherProperties(P participantEvidenceToEnrich)
                            throws EnricherException

processOtherProperties.

Overrides:

processOtherProperties in class MinimalParticipantEvidenceEnricher<P extends ParticipantEvidence>

Parameters:

participantEvidenceToEnrich - a P object.

Throws:

EnricherException - if any.

processOtherProperties

public void processOtherProperties(P participantEvidenceToEnrich,
                                   P objectSource)
                            throws EnricherException

processOtherProperties.

Overrides:

processOtherProperties in class MinimalParticipantEvidenceEnricher<P extends ParticipantEvidence>

Parameters:

participantEvidenceToEnrich - a P object.

objectSource - a P object.

Throws:

EnricherException - if any.

processExperimentalPreparations

protected void processExperimentalPreparations(P participantEvidenceToEnrich,
                                               P objectSource)
                                        throws EnricherException

processExperimentalPreparations.

Parameters:

participantEvidenceToEnrich - a P object.

objectSource - a P object.

Throws:

EnricherException - if any.

processExperimentalPreparations

protected void processExperimentalPreparations(P participantEvidenceToEnrich)
                                        throws EnricherException

processExperimentalPreparations.

Parameters:

participantEvidenceToEnrich - a P object.

Throws:

EnricherException - if any.

processParameters

protected void processParameters(P participantEvidenceToEnrich,
                                 P objectSource)
                          throws EnricherException

processParameters.

Parameters:

participantEvidenceToEnrich - a P object.

objectSource - a P object.

Throws:

EnricherException - if any.

processConfidences

protected void processConfidences(P participantEvidenceToEnrich,
                                  P objectSource)
                           throws EnricherException

processConfidences.

Parameters:

participantEvidenceToEnrich - a P object.

objectSource - a P object.

Throws:

EnricherException - if any.

processXrefs

protected void processXrefs(P participantEvidenceToEnrich,
                            P objectSource)
                     throws EnricherException

processXrefs.

Parameters:

participantEvidenceToEnrich - a P object.

objectSource - a P object.

Throws:

EnricherException - if any.

mergeExperimentalPreparations

protected void mergeExperimentalPreparations(P termToEnrich,
                                             Collection<CvTerm> toEnrichTerms,
                                             Collection<CvTerm> fetchedTerms,
                                             boolean remove)
                                      throws EnricherException

mergeExperimentalPreparations.

Parameters:

termToEnrich - a P object.

toEnrichTerms - a Collection object.

fetchedTerms - a Collection object.

remove - a boolean.

Throws:

EnricherException - if any.