java.lang.Object
- psidev.psi.mi.jami.model.impl.AbstractEntity<F>
- - psidev.psi.mi.jami.model.impl.AbstractParticipant<I,F>
  - - psidev.psi.mi.jami.model.impl.AbstractParticipantPool<InteractionEvidence,FeatureEvidence,ExperimentalParticipantCandidate>
    - - psidev.psi.mi.jami.model.impl.DefaultExperimentalParticipantPool

All Implemented Interfaces:

Iterable<ExperimentalParticipantCandidate>, Collection<ExperimentalParticipantCandidate>, EventListener, EntityInteractorChangeListener, Entity<FeatureEvidence>, ExperimentalEntity, ExperimentalParticipantPool, Participant<InteractionEvidence,FeatureEvidence>, ParticipantEvidence, ParticipantPool<InteractionEvidence,FeatureEvidence,ExperimentalParticipantCandidate>

Direct Known Subclasses:

CsvExperimentalParticipantPool
```
public class DefaultExperimentalParticipantPool
extends AbstractParticipantPool<InteractionEvidence,FeatureEvidence,ExperimentalParticipantCandidate>
implements ExperimentalParticipantPool
```
Default implementation of ExperimentalParticipantPool
Since:
```
29/07/14
```
Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Field Summary
- Fields inherited from interface psidev.psi.mi.jami.model.Participant
  ACCEPTOR_ROLE, ACCEPTOR_ROLE_MI, BAIT_ROLE, BAIT_ROLE_MI, DONOR_ROLE, DONOR_ROLE_MI, ELECTRON_ACCEPTOR_ROLE, ELECTRON_ACCEPTOR_ROLE_MI, ELECTRON_DONOR_ROLE, ELECTRON_DONOR_ROLE_MI, ENZYME_REGULATOR_ROLE, ENZYME_REGULATOR_ROLE_MI, ENZYME_ROLE, ENZYME_ROLE_MI, ENZYME_TARGET_ROLE, ENZYME_TARGET_ROLE_MI, FLUORESCENCE_ACCEPTOR_ROLE, FLUORESCENCE_ACCEPTOR_ROLE_MI, FLUORESCENCE_DONOR_ROLE, FLUORESCENCE_DONOR_ROLE_MI, INHIBITED, INHIBITED_MI, INHIBITOR, INHIBITOR_MI, NEUTRAL, NEUTRAL_MI, PHOSPHATE_ACCEPTOR_ROLE, PHOSPHATE_ACCEPTOR_ROLE_MI, PHOSPHATE_DONOR_ROLE, PHOSPHATE_DONOR_ROLE_MI, PHOTON_ACCEPTOR_ROLE, PHOTON_ACCEPTOR_ROLE_MI, PHOTON_DONOR_ROLE, PHOTON_DONOR_ROLE_MI, PREDETERMINED, PREDETERMINED_MI, PREY, PREY_MI, PUTATIVE_SELF_ROLE, PUTATIVE_SELF_ROLE_MI, SELF_ROLE, SELF_ROLE_MI, SUPPRESSED_GENE_ROLE, SUPPRESSED_GENE_ROLE_MI, SUPPRESSOR_GENE_ROLE, SUPPRESSOR_GENE_ROLE_MI, UNSPECIFIED_ROLE, UNSPECIFIED_ROLE_MI

Constructor Summary

Constructors
Constructor	Description
`DefaultExperimentalParticipantPool(String poolName)`	Constructor for DefaultExperimentalParticipantPool.
`DefaultExperimentalParticipantPool(String poolName, CvTerm participantIdentificationMethod)`	Constructor for DefaultExperimentalParticipantPool.
`DefaultExperimentalParticipantPool(String poolName, CvTerm bioRole, CvTerm participantIdentificationMethod)`	Constructor for DefaultExperimentalParticipantPool.
`DefaultExperimentalParticipantPool(String poolName, CvTerm bioRole, CvTerm expRole, CvTerm participantIdentificationMethod)`	Constructor for DefaultExperimentalParticipantPool.
`DefaultExperimentalParticipantPool(String poolName, CvTerm bioRole, CvTerm expRole, Organism expressedIn, CvTerm participantIdentificationMethod)`	Constructor for DefaultExperimentalParticipantPool.
`DefaultExperimentalParticipantPool(String poolName, CvTerm bioRole, CvTerm expRole, Stoichiometry stoichiometry, CvTerm participantIdentificationMethod)`	Constructor for DefaultExperimentalParticipantPool.
`DefaultExperimentalParticipantPool(String poolName, CvTerm bioRole, CvTerm expRole, Stoichiometry stoichiometry, Organism expressedIn, CvTerm participantIdentificationMethod)`	Constructor for DefaultExperimentalParticipantPool.
`DefaultExperimentalParticipantPool(String poolName, Stoichiometry stoichiometry)`	Constructor for DefaultExperimentalParticipantPool.
`DefaultExperimentalParticipantPool(String poolName, Stoichiometry stoichiometry, CvTerm participantIdentificationMethod)`	Constructor for DefaultExperimentalParticipantPool.
`DefaultExperimentalParticipantPool(InteractionEvidence interaction, String poolName, CvTerm participantIdentificationMethod)`	Constructor for DefaultExperimentalParticipantPool.
`DefaultExperimentalParticipantPool(InteractionEvidence interaction, String poolName, CvTerm bioRole, CvTerm participantIdentificationMethod)`	Constructor for DefaultExperimentalParticipantPool.
`DefaultExperimentalParticipantPool(InteractionEvidence interaction, String poolName, CvTerm bioRole, CvTerm expRole, CvTerm participantIdentificationMethod)`	Constructor for DefaultExperimentalParticipantPool.
`DefaultExperimentalParticipantPool(InteractionEvidence interaction, String poolName, CvTerm bioRole, CvTerm expRole, Organism expressedIn, CvTerm participantIdentificationMethod)`	Constructor for DefaultExperimentalParticipantPool.
`DefaultExperimentalParticipantPool(InteractionEvidence interaction, String poolName, CvTerm bioRole, CvTerm expRole, Stoichiometry stoichiometry, CvTerm participantIdentificationMethod)`	Constructor for DefaultExperimentalParticipantPool.
`DefaultExperimentalParticipantPool(InteractionEvidence interaction, String poolName, CvTerm bioRole, CvTerm expRole, Stoichiometry stoichiometry, Organism expressedIn, CvTerm participantIdentificationMethod)`	Constructor for DefaultExperimentalParticipantPool.
`DefaultExperimentalParticipantPool(InteractionEvidence interaction, String poolName, CvTerm bioRole, Stoichiometry stoichiometry, CvTerm participantIdentificationMethod)`	Constructor for DefaultExperimentalParticipantPool.
`DefaultExperimentalParticipantPool(InteractionEvidence interaction, String poolName, Stoichiometry stoichiometry, CvTerm participantIdentificationMethod)`	Constructor for DefaultExperimentalParticipantPool.

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`Collection<Confidence>`	`getConfidences()`	Getter for the field `confidences`.
`Collection<CvTerm>`	`getExperimentalPreparations()`	Getter for the field `experimentalPreparations`.
`CvTerm`	`getExperimentalRole()`	Getter for the field `experimentalRole`.
`Organism`	`getExpressedInOrganism()`	getExpressedInOrganism
`Collection<CvTerm>`	`getIdentificationMethods()`	Getter for the field `identificationMethods`.
`Collection<Parameter>`	`getParameters()`	Getter for the field `parameters`.
`protected void`	`initialiseConfidences()`	initialiseConfidences
`protected void`	`initialiseConfidencesWith(Collection<Confidence> confidences)`	initialiseConfidencesWith
`protected void`	`initialiseExperimentalPreparations()`	initialiseExperimentalPreparations
`protected void`	`initialiseExperimentalPreparationsWith(Collection<CvTerm> expPreparations)`	initialiseExperimentalPreparationsWith
`protected void`	`initialiseIdentificationMethods()`	initialiseIdentificationMethods
`protected void`	`initialiseIdentificationMethodsWith(Collection<CvTerm> methods)`	initialiseIdentificationMethodsWith
`protected void`	`initialiseParameters()`	initialiseParameters
`protected void`	`initialiseParametersWith(Collection<Parameter> parameters)`	initialiseParametersWith
`void`	`setExperimentalRole(CvTerm expRole)`	Sets the experimental role.
`void`	`setExpressedInOrganism(Organism organism)`	Sets the expressed in organism
`String`	`toString()`

Methods inherited from class psidev.psi.mi.jami.model.impl.AbstractParticipantPool
add, addAll, clear, contains, containsAll, getInteractor, getType, initialiseComponentCandidatesSet, initialiseComponentCandidatesSetWith, isEmpty, iterator, onInteractorUpdate, remove, removeAll, retainAll, setInteractor, setType, size, toArray, toArray

Methods inherited from class psidev.psi.mi.jami.model.impl.AbstractParticipant
addAllFeatures, addFeature, getAliases, getAnnotations, getBiologicalEffect, getBiologicalRole, getInteraction, getXrefs, initialiseAliases, initialiseAliasesWith, initialiseAnnotations, initialiseAnnotationsWith, initialiseXrefs, initialiseXrefsWith, removeAllFeatures, removeFeature, setBiologicalEffect, setBiologicalRole, setInteraction, setInteractionAndAddParticipant

Methods inherited from class psidev.psi.mi.jami.model.impl.AbstractEntity
getCausalRelationships, getChangeListener, getFeatures, getStoichiometry, initialiseCausalRelationships, initialiseCausalRelationshipsWith, initialiseFeatures, initialiseFeaturesWith, setChangeListener, setStoichiometry, setStoichiometry

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface java.util.Collection
add, addAll, clear, contains, containsAll, equals, hashCode, isEmpty, iterator, parallelStream, remove, removeAll, removeIf, retainAll, size, spliterator, stream, toArray, toArray, toArray

Methods inherited from interface psidev.psi.mi.jami.model.Entity
addAllFeatures, addFeature, getCausalRelationships, getChangeListener, getFeatures, getInteractor, getStoichiometry, removeAllFeatures, removeFeature, setChangeListener, setInteractor, setStoichiometry, setStoichiometry

Methods inherited from interface java.lang.Iterable
forEach

Methods inherited from interface psidev.psi.mi.jami.model.Participant
getAliases, getAnnotations, getBiologicalEffect, getBiologicalRole, getInteraction, getXrefs, setBiologicalEffect, setBiologicalRole, setInteraction, setInteractionAndAddParticipant

Methods inherited from interface psidev.psi.mi.jami.model.ParticipantPool
getType, setType