Uses of Package
psidev.psi.mi.jami.model.impl
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Classes in psidev.psi.mi.jami.model.impl used by psidev.psi.mi.jami.binary.impl Class Description AbstractInteraction Abstract class for interactions -
Classes in psidev.psi.mi.jami.model.impl used by psidev.psi.mi.jami.bridges.imex.extension Class Description DefaultPublication Default implementation for a Publication Notes: The equals and hashcode methods have NOT been overridden because the Publication object is a complex object. -
Classes in psidev.psi.mi.jami.model.impl used by psidev.psi.mi.jami.bridges.ols Class Description DefaultCvTerm Default implementation for CvTerm Notes: The equals and hashcode methods have been overridden to be consistent with UnambiguousCvTermComparator -
Classes in psidev.psi.mi.jami.model.impl used by psidev.psi.mi.jami.crosslink.extension Class Description AbstractEntity Abstract class for EntityAbstractFeature Abstract class for FeatureAbstractInteraction Abstract class for interactionsAbstractParticipant Abstract class for ParticipantAbstractParticipantCandidate Abstract class for participant candidateAbstractParticipantPool Abstract class for Participant poolDefaultExperimentalParticipantCandidate Default implementation of experimental participant candidateDefaultExperimentalParticipantPool Default implementation of ExperimentalParticipantPoolDefaultFeatureEvidence Default implementation for FeatureEvidence Notes: The equals and hashcode methods have NOT been overridden because the FeatureEvidence object is a complex object.DefaultInteractionEvidence Default implementation for InteractionEvidence Notes: The equals and hashcode methods have NOT been overridden because the InteractionEvidence object is a complex object.DefaultInteractor Default implementation for Interactor Notes: The equals and hashcode methods have NOT been overridden because the Interactor object is a complex object.DefaultMolecule The default implementation for a molecule Notes: The equals and hashcode methods have NOT been overridden because the molecule object is a complex object.DefaultParticipantEvidence Default implementation for ParticipantEvidence Notes: The equals and hashcode methods have NOT been overridden because the ParticipantEvidence object is a complex object.DefaultPolymer Default implementation for Polymer Notes: The equals and hashcode methods have NOT been overridden because the Polymer object is a complex object.DefaultProtein Default implementation for proteins and peptides Notes: The equals and hashcode methods have NOT been overridden because the Protein object is a complex object.DefaultRange Default implementation for Range Notes: The equals and hashcode methods have been overridden to be consistent with UnambiguousRangeAndResultingSequenceComparatorDefaultXref Default implementation for Xref Notes: The equals and hashcode methods have been overridden to be consistent with UnambiguousXrefComparator -
Classes in psidev.psi.mi.jami.model.impl used by psidev.psi.mi.jami.model.impl Class Description AbstractEntity Abstract class for EntityAbstractFeature Abstract class for FeatureAbstractInteraction Abstract class for interactionsAbstractParticipant Abstract class for ParticipantAbstractParticipantCandidate Abstract class for participant candidateAbstractParticipantPool Abstract class for Participant poolDefaultConfidence Default implementation for Confidence Notes: The equals and hashcode methods have been overridden to be consistent with UnambiguousConfidenceComparatorDefaultCooperativeEffect Default implementation for CooperativeEffect Notes: The equals and hashcode methods have NOT been overridden because the CooperativeEffect object is a complex object.DefaultCvTerm Default implementation for CvTerm Notes: The equals and hashcode methods have been overridden to be consistent with UnambiguousCvTermComparatorDefaultExperiment Default implementation for Experiment Notes: The equals and hashcode methods have NOT been overridden because the Experiment object is a complex object.DefaultInteraction Default implementation for interaction Notes: The equals and hashcode methods have NOT been overridden because the interaction object is a complex object.DefaultInteractionEvidence Default implementation for InteractionEvidence Notes: The equals and hashcode methods have NOT been overridden because the InteractionEvidence object is a complex object.DefaultInteractor Default implementation for Interactor Notes: The equals and hashcode methods have NOT been overridden because the Interactor object is a complex object.DefaultModelledInteraction Default implemntation for ModelledInteraction Notes: The equals and hashcode methods have NOT been overridden because the ModelledInteraction object is a complex object.DefaultModelledParticipant Default implementation for ModelledParticipant Notes: The equals and hashcode methods have NOT been overridden because the ModelledParticipant object is a complex object.DefaultMolecule The default implementation for a molecule Notes: The equals and hashcode methods have NOT been overridden because the molecule object is a complex object.DefaultParameter Default implementation for Parameter Notes: The equals and hashcode methods have been overridden to be consistent with UnambiguousParameterComparatorDefaultParticipant Default implementation for participant Notes: The equals and hashcode methods have NOT been overridden because the participant object is a complex object.DefaultParticipantEvidence Default implementation for ParticipantEvidence Notes: The equals and hashcode methods have NOT been overridden because the ParticipantEvidence object is a complex object.DefaultPolymer Default implementation for Polymer Notes: The equals and hashcode methods have NOT been overridden because the Polymer object is a complex object. -
Classes in psidev.psi.mi.jami.model.impl used by psidev.psi.mi.jami.tab.extension Class Description AbstractEntity Abstract class for EntityAbstractFeature Abstract class for FeatureAbstractInteraction Abstract class for interactionsAbstractParticipant Abstract class for ParticipantDefaultAlias Default implementation of Alias.DefaultAnnotation Default implementation for Annotation.DefaultBioactiveEntity Default implementation for bioactive entity Notes: The equals and hashcode methods have NOT been overridden because the BioactiveEntity object is a complex object.DefaultCausalRelationship Default implementation for CausalRelationship Notes: The equals and hashcode methods have NOT been overridden because the CausalRelationship object is a complex object.DefaultChecksum Default implementation for Checksum Notes: The equals and hashcode methods have been overridden to be consistent with UnambiguousChecksumComparatorDefaultComplex Default implementation for complexes Notes: The equals and hashcode methods have NOT been overridden because the Complex object is a complex object.DefaultConfidence Default implementation for Confidence Notes: The equals and hashcode methods have been overridden to be consistent with UnambiguousConfidenceComparatorDefaultCvTerm Default implementation for CvTerm Notes: The equals and hashcode methods have been overridden to be consistent with UnambiguousCvTermComparatorDefaultExperiment Default implementation for Experiment Notes: The equals and hashcode methods have NOT been overridden because the Experiment object is a complex object.DefaultFeature Default implementation for feature Notes: The equals and hashcode methods have NOT been overridden because the Feature object is a complex object.DefaultFeatureEvidence Default implementation for FeatureEvidence Notes: The equals and hashcode methods have NOT been overridden because the FeatureEvidence object is a complex object.DefaultGene Default implementation for gene Notes: The equals and hashcode methods have NOT been overridden because the Gene object is a complex object.DefaultInteraction Default implementation for interaction Notes: The equals and hashcode methods have NOT been overridden because the interaction object is a complex object.DefaultInteractionEvidence Default implementation for InteractionEvidence Notes: The equals and hashcode methods have NOT been overridden because the InteractionEvidence object is a complex object.DefaultInteractor Default implementation for Interactor Notes: The equals and hashcode methods have NOT been overridden because the Interactor object is a complex object.DefaultInteractorPool Default implementation for interactor poolDefaultModelledConfidence Default implementation for ModelledInteraction Notes: The equals and hashcode methods have been overridden to be consistent with UnambiguousConfidenceComparatorDefaultModelledFeature Default implementation for ModelledFeature Notes: The equals and hashcode methods have NOT been overridden because the ModelledFeature object is a complex object.DefaultModelledInteraction Default implemntation for ModelledInteraction Notes: The equals and hashcode methods have NOT been overridden because the ModelledInteraction object is a complex object.DefaultModelledParameter Default implementation for ModelledParameter Notes: The equals and hashcode methods have been overridden to be consistent with UnambiguousParameterComparatorDefaultModelledParticipant Default implementation for ModelledParticipant Notes: The equals and hashcode methods have NOT been overridden because the ModelledParticipant object is a complex object.DefaultMolecule The default implementation for a molecule Notes: The equals and hashcode methods have NOT been overridden because the molecule object is a complex object.DefaultNucleicAcid Default implementation for NucleicAcid.DefaultOrganism Default implementation for organism Notes: The equals and hashcode methods have been overridden to be consistent with UnambiguousOrganismComparatorDefaultParameter Default implementation for Parameter Notes: The equals and hashcode methods have been overridden to be consistent with UnambiguousParameterComparatorDefaultParticipant Default implementation for participant Notes: The equals and hashcode methods have NOT been overridden because the participant object is a complex object.DefaultParticipantEvidence Default implementation for ParticipantEvidence Notes: The equals and hashcode methods have NOT been overridden because the ParticipantEvidence object is a complex object.DefaultPolymer Default implementation for Polymer Notes: The equals and hashcode methods have NOT been overridden because the Polymer object is a complex object.DefaultProtein Default implementation for proteins and peptides Notes: The equals and hashcode methods have NOT been overridden because the Protein object is a complex object.DefaultPublication Default implementation for a Publication Notes: The equals and hashcode methods have NOT been overridden because the Publication object is a complex object.DefaultRange Default implementation for Range Notes: The equals and hashcode methods have been overridden to be consistent with UnambiguousRangeAndResultingSequenceComparatorDefaultSource Default implementation for Source Notes: The equals and hashcode methods have been overridden to be consistent with UnambiguousCvTermComparatorDefaultStoichiometry Default implementation for stoichiometry Notes: The equals and hashcode methods have been overridden to be consistent with StoichiometryComparator -
Classes in psidev.psi.mi.jami.model.impl used by psidev.psi.mi.jami.xml.model.extension Class Description DefaultChecksum Default implementation for Checksum Notes: The equals and hashcode methods have been overridden to be consistent with UnambiguousChecksumComparatorDefaultStoichiometry Default implementation for stoichiometry Notes: The equals and hashcode methods have been overridden to be consistent with StoichiometryComparator -
Classes in psidev.psi.mi.jami.model.impl used by psidev.psi.mi.jami.xml.model.extension.binary Class Description AbstractInteraction Abstract class for interactions -
Classes in psidev.psi.mi.jami.model.impl used by psidev.psi.mi.jami.xml.model.extension.binary.xml253 Class Description AbstractInteraction Abstract class for interactions -
Classes in psidev.psi.mi.jami.model.impl used by psidev.psi.mi.jami.xml.model.extension.binary.xml254 Class Description AbstractInteraction Abstract class for interactions -
Classes in psidev.psi.mi.jami.model.impl used by psidev.psi.mi.jami.xml.model.extension.binary.xml30 Class Description AbstractInteraction Abstract class for interactions -
Classes in psidev.psi.mi.jami.model.impl used by psidev.psi.mi.jami.xml.model.extension.xml253 Class Description DefaultBioactiveEntity Default implementation for bioactive entity Notes: The equals and hashcode methods have NOT been overridden because the BioactiveEntity object is a complex object.DefaultCooperativeEffect Default implementation for CooperativeEffect Notes: The equals and hashcode methods have NOT been overridden because the CooperativeEffect object is a complex object.DefaultGene Default implementation for gene Notes: The equals and hashcode methods have NOT been overridden because the Gene object is a complex object.DefaultInteractor Default implementation for Interactor Notes: The equals and hashcode methods have NOT been overridden because the Interactor object is a complex object.DefaultMolecule The default implementation for a molecule Notes: The equals and hashcode methods have NOT been overridden because the molecule object is a complex object.DefaultNucleicAcid Default implementation for NucleicAcid.DefaultPolymer Default implementation for Polymer Notes: The equals and hashcode methods have NOT been overridden because the Polymer object is a complex object.DefaultPreassemby Default implementation for Preassembly Notes: The equals and hashcode methods have NOT been overridden because the Preassembly object is a complex object.DefaultProtein Default implementation for proteins and peptides Notes: The equals and hashcode methods have NOT been overridden because the Protein object is a complex object. -
Classes in psidev.psi.mi.jami.model.impl used by psidev.psi.mi.jami.xml.model.extension.xml254 Class Description DefaultBioactiveEntity Default implementation for bioactive entity Notes: The equals and hashcode methods have NOT been overridden because the BioactiveEntity object is a complex object.DefaultCooperativeEffect Default implementation for CooperativeEffect Notes: The equals and hashcode methods have NOT been overridden because the CooperativeEffect object is a complex object.DefaultGene Default implementation for gene Notes: The equals and hashcode methods have NOT been overridden because the Gene object is a complex object.DefaultInteractor Default implementation for Interactor Notes: The equals and hashcode methods have NOT been overridden because the Interactor object is a complex object.DefaultMolecule The default implementation for a molecule Notes: The equals and hashcode methods have NOT been overridden because the molecule object is a complex object.DefaultNucleicAcid Default implementation for NucleicAcid.DefaultPolymer Default implementation for Polymer Notes: The equals and hashcode methods have NOT been overridden because the Polymer object is a complex object.DefaultPreassemby Default implementation for Preassembly Notes: The equals and hashcode methods have NOT been overridden because the Preassembly object is a complex object.DefaultProtein Default implementation for proteins and peptides Notes: The equals and hashcode methods have NOT been overridden because the Protein object is a complex object. -
Classes in psidev.psi.mi.jami.model.impl used by psidev.psi.mi.jami.xml.model.extension.xml300 Class Description DefaultBioactiveEntity Default implementation for bioactive entity Notes: The equals and hashcode methods have NOT been overridden because the BioactiveEntity object is a complex object.DefaultGene Default implementation for gene Notes: The equals and hashcode methods have NOT been overridden because the Gene object is a complex object.DefaultInteractor Default implementation for Interactor Notes: The equals and hashcode methods have NOT been overridden because the Interactor object is a complex object.DefaultMolecule The default implementation for a molecule Notes: The equals and hashcode methods have NOT been overridden because the molecule object is a complex object.DefaultNucleicAcid Default implementation for NucleicAcid.DefaultPolymer Default implementation for Polymer Notes: The equals and hashcode methods have NOT been overridden because the Polymer object is a complex object.DefaultProtein Default implementation for proteins and peptides Notes: The equals and hashcode methods have NOT been overridden because the Protein object is a complex object.