Package psidev.psi.mi.jami.tab.io.writer.extended

Class Mitab28EvidenceWriter

java.lang.Object

psidev.psi.mi.jami.tab.io.writer.AbstractMitabWriter<InteractionEvidence,BinaryInteractionEvidence,ParticipantEvidence>

psidev.psi.mi.jami.tab.io.writer.extended.Mitab25EvidenceWriter

psidev.psi.mi.jami.tab.io.writer.extended.Mitab26EvidenceWriter

psidev.psi.mi.jami.tab.io.writer.extended.Mitab27EvidenceWriter

psidev.psi.mi.jami.tab.io.writer.extended.Mitab28EvidenceWriter

All Implemented Interfaces:

InteractionWriter<InteractionEvidence>

public class Mitab28EvidenceWriter
extends Mitab27EvidenceWriter

Mitab 2.8 writer for interaction evidence

Since:

20/06/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
Mitab28EvidenceWriter()	Constructor for Mitab28EvidenceWriter.
Mitab28EvidenceWriter(File file)	Constructor for Mitab28EvidenceWriter.
Mitab28EvidenceWriter(File file, ComplexExpansionMethod<InteractionEvidence,BinaryInteractionEvidence> expansionMethod)	Constructor for Mitab28EvidenceWriter.
Mitab28EvidenceWriter(OutputStream output)	Constructor for Mitab28EvidenceWriter.
Mitab28EvidenceWriter(OutputStream output, ComplexExpansionMethod<InteractionEvidence,BinaryInteractionEvidence> expansionMethod)	Constructor for Mitab28EvidenceWriter.
Mitab28EvidenceWriter(Writer writer)	Constructor for Mitab28EvidenceWriter.
Mitab28EvidenceWriter(Writer writer, ComplexExpansionMethod<InteractionEvidence,BinaryInteractionEvidence> expansionMethod)	Constructor for Mitab28EvidenceWriter.

Method Summary

Modifier and Type	Method	Description
MitabVersion	getVersion()	getVersion.
protected void	initialiseFile(File file)	initialiseFile.
protected void	initialiseOutputStream(OutputStream output)	initialiseOutputStream.
protected void	initialiseWriter(Writer writer)	initialiseWriter.

Methods inherited from class psidev.psi.mi.jami.tab.io.writer.extended.Mitab25EvidenceWriter

initialiseExpansionMethod

Methods inherited from class psidev.psi.mi.jami.tab.io.writer.AbstractMitabWriter

close, end, flush, getBinaryWriter, getExpansionMethod, hasStarted, initialiseContext, isWriteHeader, reset, setBinaryWriter, setExpansionMethod, setStarted, setWriteHeader, start, write, write, write

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

Mitab28EvidenceWriter

public Mitab28EvidenceWriter()

Constructor for Mitab28EvidenceWriter.

Mitab28EvidenceWriter

public Mitab28EvidenceWriter(File file)
                      throws IOException

Constructor for Mitab28EvidenceWriter.

Parameters:

file - a File object.

Throws:

IOException - if any.

Mitab28EvidenceWriter

public Mitab28EvidenceWriter(OutputStream output)

Constructor for Mitab28EvidenceWriter.

Parameters:

output - a OutputStream object.

Mitab28EvidenceWriter

public Mitab28EvidenceWriter(Writer writer)

Constructor for Mitab28EvidenceWriter.

Parameters:

writer - a Writer object.

Mitab28EvidenceWriter

public Mitab28EvidenceWriter(OutputStream output,
                             ComplexExpansionMethod<InteractionEvidence,BinaryInteractionEvidence> expansionMethod)

Constructor for Mitab28EvidenceWriter.

Parameters:

output - a OutputStream object.

expansionMethod - a ComplexExpansionMethod object.

Mitab28EvidenceWriter

public Mitab28EvidenceWriter(File file,
                             ComplexExpansionMethod<InteractionEvidence,BinaryInteractionEvidence> expansionMethod)
                      throws IOException

Constructor for Mitab28EvidenceWriter.

Parameters:

file - a File object.

expansionMethod - a ComplexExpansionMethod object.

Throws:

IOException - if any.

Mitab28EvidenceWriter

public Mitab28EvidenceWriter(Writer writer,
                             ComplexExpansionMethod<InteractionEvidence,BinaryInteractionEvidence> expansionMethod)

Constructor for Mitab28EvidenceWriter.

Parameters:

writer - a Writer object.

expansionMethod - a ComplexExpansionMethod object.

Method Detail

getVersion

public MitabVersion getVersion()

getVersion.

Overrides:

getVersion in class Mitab27EvidenceWriter

Returns:

a MitabVersion object.

initialiseWriter

protected void initialiseWriter(Writer writer)

initialiseWriter.

Overrides:

initialiseWriter in class Mitab27EvidenceWriter

Parameters:

writer - a Writer object.

initialiseOutputStream

protected void initialiseOutputStream(OutputStream output)

initialiseOutputStream.

Overrides:

initialiseOutputStream in class Mitab27EvidenceWriter

Parameters:

output - a OutputStream object.

initialiseFile

protected void initialiseFile(File file)
                       throws IOException

initialiseFile.

Overrides:

initialiseFile in class Mitab27EvidenceWriter

Parameters:

file - a File object.

Throws:

IOException - if any.