Package psidev.psi.mi.jami.utils.comparator.participant

Class EntityComparator

java.lang.Object

psidev.psi.mi.jami.utils.comparator.participant.EntityComparator

All Implemented Interfaces:

Comparator<Entity>

Direct Known Subclasses:

UnambiguousEntityComparator, UnambiguousExactEntityComparator

public class EntityComparator
extends Object
implements Comparator<Entity>

Generic entity comparator. Modelled participants come first and then experimental participants. - It uses ParticipantEvidenceComparator to compare experimental participants - It uses ModelledParticipantComparator to compare biological participants - It uses ParticipantBaseComparator to compare basic participant properties - It uses ParticipantPoolComparator to compare basic participant pool properties

Since:

04/02/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
EntityComparator(EntityBaseComparator participantBaseComparator, ExperimentalEntityComparator experimentalParticipantComparator, ModelledEntityComparator modelledParticipantComparator, ParticipantComparator poolComparator)	Constructor for EntityComparator.

Method Summary

Modifier and Type	Method	Description
int	compare(Entity participant1, Entity participant2)	Modelled participants come first and then experimental participants.
ModelledEntityComparator	getBiologicalEntityComparator()	Getter for the field biologicalEntityComparator.
EntityBaseComparator	getEntityBaseComparator()	Getter for the field entityBaseComparator.
ExperimentalEntityComparator	getExperimentalEntityComparator()	Getter for the field experimentalEntityComparator.
ParticipantComparator	getParticipantComparator()	Getter for the field participantComparator.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface java.util.Comparator

equals, reversed, thenComparing, thenComparing, thenComparing, thenComparingDouble, thenComparingInt, thenComparingLong

Constructor Detail

EntityComparator

public EntityComparator(EntityBaseComparator participantBaseComparator,
                        ExperimentalEntityComparator experimentalParticipantComparator,
                        ModelledEntityComparator modelledParticipantComparator,
                        ParticipantComparator poolComparator)

Constructor for EntityComparator.

Parameters:

participantBaseComparator - a EntityBaseComparator object.

experimentalParticipantComparator - a ExperimentalEntityComparator object.

modelledParticipantComparator - a ModelledEntityComparator object.

poolComparator - a ParticipantComparator object.

Method Detail

compare

public int compare(Entity participant1,
                   Entity participant2)

Modelled participants come first and then experimental participants. - It uses ParticipantEvidenceComparator to compare experimental participants - It uses ModelledParticipantComparator to compare biological participants - It uses ParticipantBaseComparator to compare basic participant properties

Specified by:

compare in interface Comparator<Entity>

Parameters:

participant1 - a Entity object.

participant2 - a Entity object.

Returns:

a int.

getEntityBaseComparator

public EntityBaseComparator getEntityBaseComparator()

Getter for the field entityBaseComparator.

Returns:

a EntityBaseComparator object.

getExperimentalEntityComparator

public ExperimentalEntityComparator getExperimentalEntityComparator()

Getter for the field experimentalEntityComparator.

Returns:

a ExperimentalEntityComparator object.

getBiologicalEntityComparator

public ModelledEntityComparator getBiologicalEntityComparator()

Getter for the field biologicalEntityComparator.

Returns:

a ModelledEntityComparator object.

getParticipantComparator

public ParticipantComparator getParticipantComparator()

Getter for the field participantComparator.

Returns:

a ParticipantComparator object.