Package psidev.psi.mi.jami.utils.comparator.participant

Class UnambiguousEntityComparator

java.lang.Object

psidev.psi.mi.jami.utils.comparator.participant.EntityComparator

psidev.psi.mi.jami.utils.comparator.participant.UnambiguousEntityComparator

All Implemented Interfaces:

Comparator<Entity>

public class UnambiguousEntityComparator
extends EntityComparator

Unambiguous generic entity comparator Modelled participants come first and then experimental participants. - It uses UnambiguousParticipantPoolComparator to compare participant sets - It uses UnambiguousModelledParticipantComparator to compare components - It uses UnambiguousParticipantEvidenceComparator to compare experimental participants - It uses UnambiguousParticipantBaseComparator to compare basic participant properties

Since:

04/02/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
UnambiguousEntityComparator()	Creates a UnambiguousParticipantComparator.

Method Summary

Modifier and Type	Method	Description
static boolean	areEquals(Entity participant1, Entity participant2)	Use UnambiguousExactEntityComparator to know if two participants are equals.
int	compare(Entity participant1, Entity participant2)	Modelled participants come first and then experimental participants.
UnambiguousModelledEntityComparator	getBiologicalEntityComparator()	Getter for the field biologicalEntityComparator.
UnambiguousEntityBaseComparator	getEntityBaseComparator()	Getter for the field entityBaseComparator.
UnambiguousExperimentalEntityComparator	getExperimentalEntityComparator()	Getter for the field experimentalEntityComparator.
UnambiguousParticipantComparator	getParticipantComparator()	Getter for the field participantComparator.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface java.util.Comparator

equals, reversed, thenComparing, thenComparing, thenComparing, thenComparingDouble, thenComparingInt, thenComparingLong

Constructor Detail

UnambiguousEntityComparator

public UnambiguousEntityComparator()

Creates a UnambiguousParticipantComparator. It will use a UnambiguousExactParticipantBaseComparator to compare basic feature properties

Method Detail

getEntityBaseComparator

public UnambiguousEntityBaseComparator getEntityBaseComparator()

Getter for the field entityBaseComparator.

Overrides:

getEntityBaseComparator in class EntityComparator

Returns:

a EntityBaseComparator object.

getExperimentalEntityComparator

public UnambiguousExperimentalEntityComparator getExperimentalEntityComparator()

Getter for the field experimentalEntityComparator.

Overrides:

getExperimentalEntityComparator in class EntityComparator

Returns:

a ExperimentalEntityComparator object.

getBiologicalEntityComparator

public UnambiguousModelledEntityComparator getBiologicalEntityComparator()

Getter for the field biologicalEntityComparator.

Overrides:

getBiologicalEntityComparator in class EntityComparator

Returns:

a ModelledEntityComparator object.

getParticipantComparator

public UnambiguousParticipantComparator getParticipantComparator()

Getter for the field participantComparator.

Overrides:

getParticipantComparator in class EntityComparator

Returns:

a ParticipantComparator object.

compare

public int compare(Entity participant1,
                   Entity participant2)

Modelled participants come first and then experimental participants. - It uses ParticipantEvidenceComparator to compare experimental participants - It uses ModelledParticipantComparator to compare biological participants - It uses ParticipantBaseComparator to compare basic participant properties Modelled participants come first and then experimental participants. - It uses UnambiguousParticipantPoolComparator to compare participant sets - It uses UnambiguousModelledParticipantComparator to compare components - It uses UnambiguousParticipantEvidenceComparator to compare experimental participants - It uses UnambiguousParticipantBaseComparator to compare basic participant properties

Specified by:

compare in interface Comparator<Entity>

Overrides:

compare in class EntityComparator

Parameters:

participant1 - a Entity object.

participant2 - a Entity object.

Returns:

a int.

areEquals

public static boolean areEquals(Entity participant1,
                                Entity participant2)

Use UnambiguousExactEntityComparator to know if two participants are equals.

Parameters:

participant1 - a Entity object.

participant2 - a Entity object.

Returns:

true if the two participants are equal