Uses of Interface
psidev.psi.mi.jami.xml.io.writer.elements.PsiXmlVariableNameWriter

Packages that use PsiXmlVariableNameWriter

Package	Description
psidev.psi.mi.jami.xml.io.writer.elements
psidev.psi.mi.jami.xml.io.writer.elements.impl
psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts
psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts.xml30
psidev.psi.mi.jami.xml.io.writer.elements.impl.extended
psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.xml25.xml253
psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.xml25.xml254
psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.xml30
psidev.psi.mi.jami.xml.io.writer.elements.impl.xml30

Uses of PsiXmlVariableNameWriter in psidev.psi.mi.jami.xml.io.writer.elements

Subinterfaces of PsiXmlVariableNameWriter in psidev.psi.mi.jami.xml.io.writer.elements

Modifier and Type	Interface	Description
interface	PsiXmlXrefWriter	Interface for PSI-XML Xref writers

Methods in psidev.psi.mi.jami.xml.io.writer.elements that return PsiXmlVariableNameWriter

Modifier and Type	Method	Description
static PsiXmlVariableNameWriter<CvTerm>	PsiXmlElementWriterFactory.createCvWriter(XMLStreamWriter streamWriter, boolean extended, PsiXmlElementWriter<Alias> aliasWriter, PsiXmlXrefWriter primaryRefWriter)	createCvWriter.
static PsiXmlVariableNameWriter<CvTerm>	PsiXmlElementWriterFactory.createExperimentalCvWriter(XMLStreamWriter streamWriter, PsiXmlVersion version, boolean extended, PsiXmlObjectCache objectIndex, PsiXmlElementWriter<Alias> aliasWriter, PsiXmlXrefWriter primaryRefWriter)	createExperimentalCvWriter.
static PsiXmlVariableNameWriter<CvTerm>	PsiXmlElementWriterFactory.createOpenCvWriter(XMLStreamWriter streamWriter, boolean extended, PsiXmlElementWriter<Alias> aliasWriter, PsiXmlElementWriter<Annotation> attributeWriter, PsiXmlXrefWriter primaryRefWriter)	createOpenCvWriter.

Methods in psidev.psi.mi.jami.xml.io.writer.elements with parameters of type PsiXmlVariableNameWriter

Modifier and Type	Method	Description
static PsiXmlElementWriter<Allostery>	PsiXmlElementWriterFactory.createAllosteryWriter(XMLStreamWriter streamWriter, boolean expanded, PsiXmlObjectCache objectIndex, PsiXmlVariableNameWriter<CvTerm> cvWriter, PsiXmlElementWriter<Annotation> attributeWriter, PsiXmlPublicationWriter publicationWriter)	createAllosteryWriter.
static PsiXmlCausalRelationshipWriter	PsiXmlElementWriterFactory.createCausalRelationshipWriter(XMLStreamWriter streamWriter, boolean extended, PsiXmlObjectCache objectIndex, PsiXmlVariableNameWriter<CvTerm> cvWriter)	createCausalRelationshipWriter.
static PsiXmlElementWriter<Confidence>[]	PsiXmlElementWriterFactory.createConfidenceWriters(XMLStreamWriter streamWriter, boolean extended, PsiXmlObjectCache objectIndex, PsiXmlVersion version, PsiXmlVariableNameWriter<CvTerm> confidenceTypeWriter, PsiXmlPublicationWriter publicationWriter)	createConfidenceWriters.
static PsiXmlElementWriter<CooperativityEvidence>	PsiXmlElementWriterFactory.createCooperativityEvidenceWriter(XMLStreamWriter streamWriter, boolean expanded, PsiXmlVariableNameWriter<CvTerm> cvWriter, PsiXmlPublicationWriter publicationWriter)	createCooperativityEvidenceWriter.
static PsiXmlInteractionWriter[]	PsiXmlElementWriterFactory.createDefaultPsiXmlInteractionWriters(XMLStreamWriter streamWriter, PsiXmlObjectCache objectIndex, PsiXmlVersion version, PsiXmlType xmlType, InteractionCategory interactionCategory, ComplexType complexType, PsiXmlElementWriter<Alias> aliasWriter, PsiXmlElementWriter<Annotation> attributeWriter, PsiXmlXrefWriter primaryRefWriter, PsiXmlElementWriter[] confidenceWriters, PsiXmlElementWriter<Checksum> checksumWriter, PsiXmlVariableNameWriter<CvTerm> interactionTypeWriter, PsiXmlExperimentWriter experimentWriter, PsiXmlElementWriter<String> availabilityWriter, PsiXmlParameterWriter[] parameterWriters, PsiXmlParticipantWriter[] participantWriters, PsiXmlElementWriter inferredInteractionWriter, PsiXmlPublicationWriter publicationWriter, PsiXmlVariableNameWriter<CvTerm> openCvWriter)	createDefaultPsiXmlInteractionWriters.
static PsiXmlExperimentWriter	PsiXmlElementWriterFactory.createExperimentWriter(XMLStreamWriter streamWriter, boolean extended, PsiXmlObjectCache objectIndex, PsiXmlVersion version, boolean named, PsiXmlElementWriter<Alias> aliasWriter, PsiXmlElementWriter<Annotation> attributeWriter, PsiXmlXrefWriter primaryRefWriter, PsiXmlPublicationWriter publicationWriter, PsiXmlElementWriter<Organism> nonExperimentalHostOrganismWriter, PsiXmlVariableNameWriter<CvTerm> detectionMethodWriter, PsiXmlElementWriter<Confidence> confidenceWriter)	createExperimentWriter.
static PsiXmlInteractionWriter[]	PsiXmlElementWriterFactory.createExtendedPsiXmlInteractionWriters(XMLStreamWriter streamWriter, PsiXmlObjectCache objectIndex, PsiXmlVersion version, PsiXmlType xmlType, InteractionCategory interactionCategory, ComplexType complexType, PsiXmlElementWriter<Alias> aliasWriter, PsiXmlElementWriter<Annotation> attributeWriter, PsiXmlXrefWriter primaryRefWriter, PsiXmlElementWriter[] confidenceWriters, PsiXmlElementWriter<Checksum> checksumWriter, PsiXmlVariableNameWriter<CvTerm> interactionTypeWriter, PsiXmlExperimentWriter experimentWriter, PsiXmlElementWriter<String> availabilityWriter, PsiXmlParameterWriter[] parameterWriters, PsiXmlParticipantWriter[] participantWriters, PsiXmlElementWriter inferredInteractionWriter, PsiXmlPublicationWriter publicationWriter, PsiXmlVariableNameWriter<CvTerm> openCvWriter)	createExtendedPsiXmlInteractionWriters.
static <F extends Feature> PsiXmlElementWriter<F>[]	PsiXmlElementWriterFactory.createFeatureWriter(XMLStreamWriter streamWriter, boolean extended, PsiXmlObjectCache objectIndex, PsiXmlVersion version, InteractionCategory category, PsiXmlElementWriter<Alias> aliasWriter, PsiXmlElementWriter<Annotation> attributeWriter, PsiXmlXrefWriter primaryRefWriter, PsiXmlVariableNameWriter<CvTerm> featureTypeWriter, PsiXmlParameterWriter parameterWriter)	createFeatureWriter.
static PsiXmlElementWriter<Organism>	PsiXmlElementWriterFactory.createHostOrganismWriter(XMLStreamWriter streamWriter, PsiXmlVersion version, boolean extended, PsiXmlObjectCache objectIndex, PsiXmlElementWriter<Alias> aliasWriter, PsiXmlElementWriter<Annotation> annotationWriter, PsiXmlXrefWriter xrefWriter, PsiXmlVariableNameWriter<CvTerm> openCvWriter)	createHostOrganismWriter.
static PsiXmlInteractionWriter[]	PsiXmlElementWriterFactory.createInteractionWritersFor(XMLStreamWriter streamWriter, PsiXmlObjectCache objectIndex, PsiXmlVersion version, PsiXmlType xmlType, InteractionCategory interactionCategory, ComplexType complexType, boolean extended, boolean named, PsiXmlElementWriter<Alias> aliasWriter, PsiXmlElementWriter<Annotation> attributeWriter, PsiXmlXrefWriter primaryRefWriter, PsiXmlElementWriter[] confidenceWriters, PsiXmlElementWriter<Checksum> checksumWriter, PsiXmlVariableNameWriter<CvTerm> interactionTypeWriter, PsiXmlVariableNameWriter<CvTerm> openCvWriter, PsiXmlExperimentWriter experimentWriter, PsiXmlElementWriter<String> availabilityWriter, PsiXmlElementWriter<Interactor> interactorWriter, PsiXmlPublicationWriter publicationWriter)	createInteractionWritersFor.
static PsiXmlElementWriter<Interactor>	PsiXmlElementWriterFactory.createInteractorWriter(PsiXmlVersion version, XMLStreamWriter streamWriter, boolean extended, PsiXmlObjectCache objectIndex, PsiXmlElementWriter<Alias> aliasWriter, PsiXmlElementWriter<Annotation> attributeWriter, PsiXmlXrefWriter primaryRefWriter, PsiXmlVariableNameWriter<CvTerm> interactorTypeWriter, PsiXmlElementWriter<Organism> organismWriter, PsiXmlElementWriter<Checksum> checksumWriter)	createInteractorWriter.
static PsiXmlInteractionWriter[]	PsiXmlElementWriterFactory.createNamedPsiXmlInteractionWriters(XMLStreamWriter streamWriter, PsiXmlObjectCache objectIndex, PsiXmlVersion version, PsiXmlType xmlType, InteractionCategory interactionCategory, ComplexType complexType, PsiXmlElementWriter<Alias> aliasWriter, PsiXmlElementWriter<Annotation> attributeWriter, PsiXmlXrefWriter primaryRefWriter, PsiXmlElementWriter[] confidenceWriters, PsiXmlElementWriter<Checksum> checksumWriter, PsiXmlVariableNameWriter<CvTerm> interactionTypeWriter, PsiXmlExperimentWriter experimentWriter, PsiXmlElementWriter<String> availabilityWriter, PsiXmlParameterWriter[] parameterWriters, PsiXmlParticipantWriter[] participantWriters, PsiXmlElementWriter inferredInteractionWriter, PsiXmlPublicationWriter publicationWriter, PsiXmlVariableNameWriter<CvTerm> openCvWriter)	createNamedPsiXmlInteractionWriters.
static PsiXmlElementWriter<Organism>	PsiXmlElementWriterFactory.createOrganismWriter(XMLStreamWriter streamWriter, boolean extended, PsiXmlElementWriter<Alias> aliasWriter, PsiXmlElementWriter<Annotation> annotationWriter, PsiXmlXrefWriter xrefWriter, PsiXmlVariableNameWriter<CvTerm> openCvWriter)	createOrganismWriter.
static <P extends Participant> PsiXmlParticipantWriter<P>[]	PsiXmlElementWriterFactory.createParticipantWriter(XMLStreamWriter streamWriter, boolean extended, PsiXmlObjectCache objectIndex, PsiXmlVersion version, PsiXmlType xmlType, InteractionCategory category, PsiXmlElementWriter<Alias> aliasWriter, PsiXmlElementWriter<Annotation> attributeWriter, PsiXmlXrefWriter primaryRefWriter, PsiXmlElementWriter<Confidence> confidenceWriter, PsiXmlElementWriter<Interactor> interactorWriter, PsiXmlVariableNameWriter<CvTerm> cvWriter, PsiXmlVariableNameWriter<CvTerm> openCvWriter, PsiXmlParameterWriter parameterWriter)	createParticipantWriter.
static PsiXmlElementWriter<Position>[]	PsiXmlElementWriterFactory.createPositionsWriter(XMLStreamWriter streamWriter, boolean extended, PsiXmlVariableNameWriter<CvTerm> statusWriter)	createPositionsWriter.
static PsiXmlElementWriter<Preassembly>	PsiXmlElementWriterFactory.createPreassemblyWriter(XMLStreamWriter streamWriter, boolean extended, PsiXmlObjectCache objectIndex, PsiXmlVariableNameWriter<CvTerm> cvWriter, PsiXmlElementWriter<Annotation> attributeWriter, PsiXmlPublicationWriter publicationWriter)	createPreassemblyWriter.
static PsiXmlElementWriter<Range>	PsiXmlElementWriterFactory.createRangeWriter(XMLStreamWriter streamWriter, boolean extended, PsiXmlObjectCache objectIndex, PsiXmlVersion version, PsiXmlXrefWriter refWriter, PsiXmlVariableNameWriter<CvTerm> statusWriter)	createRangeWriter.
static PsiXmlElementWriter<VariableParameter>	PsiXmlElementWriterFactory.createVariableParameterWriter(XMLStreamWriter streamWriter, boolean extended, PsiXmlObjectCache objectIndex, PsiXmlVariableNameWriter<CvTerm> cvWriter)	createVariableParameterWriter.

Uses of PsiXmlVariableNameWriter in psidev.psi.mi.jami.xml.io.writer.elements.impl

Classes in psidev.psi.mi.jami.xml.io.writer.elements.impl that implement PsiXmlVariableNameWriter

Modifier and Type	Class	Description
class	XmlCvTermWriter	CvTerm writers for cvs without attributes
class	XmlDbXrefWriter	Xml Writer for Xref object
class	XmlOpenCvTermWriter	Xml writer for open cv terms

Methods in psidev.psi.mi.jami.xml.io.writer.elements.impl that return PsiXmlVariableNameWriter

Modifier and Type	Method	Description
PsiXmlVariableNameWriter<CvTerm>	XmlInteractorWriter.getInteractorTypeWriter()	Getter for the field interactorTypeWriter.
PsiXmlVariableNameWriter<CvTerm>	XmlConfidenceWriter.getTypeWriter()	Getter for the field typeWriter.

Methods in psidev.psi.mi.jami.xml.io.writer.elements.impl with parameters of type PsiXmlVariableNameWriter

Modifier and Type	Method	Description
void	XmlInteractorWriter.setInteractorTypeWriter(PsiXmlVariableNameWriter<CvTerm> interactorTypeWriter)	Setter for the field interactorTypeWriter.
void	XmlConfidenceWriter.setTypeWriter(PsiXmlVariableNameWriter<CvTerm> typeWriter)	Setter for the field typeWriter.

Uses of PsiXmlVariableNameWriter in psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts

Methods in psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts that return PsiXmlVariableNameWriter

Modifier and Type	Method	Description
PsiXmlVariableNameWriter<CvTerm>	AbstractXmlParticipantWriter.getBiologicalRoleWriter()	Getter for the field biologicalRoleWriter.
PsiXmlVariableNameWriter<CvTerm>	AbstractXmlOrganismWriter.getCvWriter()	Getter for the field cvWriter.
PsiXmlVariableNameWriter<CvTerm>	AbstractXmlExperimentWriter.getDetectionMethodWriter()	Getter for the field detectionMethodWriter.
PsiXmlVariableNameWriter<CvTerm>	AbstractXmlParticipantEvidenceWriter.getExperimentalCvWriter()	getExperimentalCvWriter.
PsiXmlVariableNameWriter<CvTerm>	AbstractXmlFeatureWriter.getFeatureTypeWriter()	Getter for the field featureTypeWriter.
PsiXmlVariableNameWriter<CvTerm>	AbstractXmlInteractionWriter.getInteractionTypeWriter()	Getter for the field interactionTypeWriter.
PsiXmlVariableNameWriter<CvTerm>	AbstractXmlPositionWriter.getStatusWriter()	Getter for the field statusWriter.

Methods in psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts with parameters of type PsiXmlVariableNameWriter

Modifier and Type	Method	Description
void	AbstractXmlParticipantWriter.setBiologicalRoleWriter(PsiXmlVariableNameWriter<CvTerm> biologicalRoleWriter)	Setter for the field biologicalRoleWriter.
void	AbstractXmlOrganismWriter.setCvWriter(PsiXmlVariableNameWriter<CvTerm> cvWriter)	Setter for the field cvWriter.
void	AbstractXmlExperimentWriter.setDetectionMethodWriter(PsiXmlVariableNameWriter<CvTerm> detectionMethodWriter)	Setter for the field detectionMethodWriter.
void	AbstractXmlParticipantEvidenceWriter.setExperimentalCvWriter(PsiXmlVariableNameWriter<CvTerm> cvWriter)	setExperimentalCvWriter.
void	AbstractXmlFeatureWriter.setFeatureTypeWriter(PsiXmlVariableNameWriter<CvTerm> featureTypeWriter)	Setter for the field featureTypeWriter.
void	AbstractXmlInteractionWriter.setInteractionTypeWriter(PsiXmlVariableNameWriter<CvTerm> interactionTypeWriter)	Setter for the field interactionTypeWriter.
void	AbstractXmlPositionWriter.setStatusWriter(PsiXmlVariableNameWriter<CvTerm> statusWriter)	Setter for the field statusWriter.

Uses of PsiXmlVariableNameWriter in psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts.xml30

Methods in psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts.xml30 that return PsiXmlVariableNameWriter

Modifier and Type	Method	Description
PsiXmlVariableNameWriter<CvTerm>	AbstractXmlCooperativeEffectWriter.getCvWriter()	Getter for the field cvWriter.

Methods in psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts.xml30 with parameters of type PsiXmlVariableNameWriter

Modifier and Type	Method	Description
void	AbstractXmlCooperativeEffectWriter.setCvWriter(PsiXmlVariableNameWriter<CvTerm> cvWriter)	Setter for the field cvWriter.

Uses of PsiXmlVariableNameWriter in psidev.psi.mi.jami.xml.io.writer.elements.impl.extended

Classes in psidev.psi.mi.jami.xml.io.writer.elements.impl.extended that implement PsiXmlVariableNameWriter

Modifier and Type	Class	Description
class	XmlCvTermWriter	CvTerm writers for cvs without attributes
class	XmlDbXrefWriter	XML writer for an expanded PSI25Xref having secondary and annotations
class	XmlOpenCvTermWriter	Xml writer for open cv terms

Uses of PsiXmlVariableNameWriter in psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.xml25.xml253

Classes in psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.xml25.xml253 that implement PsiXmlVariableNameWriter

Modifier and Type	Class	Description
class	XmlExperimentalCvTermWriter	XML writer for experimental cv terms

Methods in psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.xml25.xml253 that return PsiXmlVariableNameWriter

Modifier and Type	Method	Description
PsiXmlVariableNameWriter<CvTerm>	XmlConfidenceWriter.getTypeWriter()	Getter for the field typeWriter.

Methods in psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.xml25.xml253 with parameters of type PsiXmlVariableNameWriter

Modifier and Type	Method	Description
void	XmlConfidenceWriter.setTypeWriter(PsiXmlVariableNameWriter<CvTerm> typeWriter)	Setter for the field typeWriter.

Uses of PsiXmlVariableNameWriter in psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.xml25.xml254

Classes in psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.xml25.xml254 that implement PsiXmlVariableNameWriter

Modifier and Type	Class	Description
class	XmlExperimentalCvTermWriter	XML writer for experimental cv terms

Methods in psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.xml25.xml254 that return PsiXmlVariableNameWriter

Modifier and Type	Method	Description
PsiXmlVariableNameWriter<CvTerm>	XmlConfidenceWriter.getTypeWriter()	Getter for the field typeWriter.

Methods in psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.xml25.xml254 with parameters of type PsiXmlVariableNameWriter

Modifier and Type	Method	Description
void	XmlConfidenceWriter.setTypeWriter(PsiXmlVariableNameWriter<CvTerm> typeWriter)	Setter for the field typeWriter.

Uses of PsiXmlVariableNameWriter in psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.xml30

Classes in psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.xml30 that implement PsiXmlVariableNameWriter

Modifier and Type	Class	Description
class	XmlExperimentalCvTermWriter	XML writer for experimental cv terms

Methods in psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.xml30 that return PsiXmlVariableNameWriter

Modifier and Type	Method	Description
PsiXmlVariableNameWriter<CvTerm>	XmlConfidenceWriter.getTypeWriter()	Getter for the field typeWriter.

Methods in psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.xml30 with parameters of type PsiXmlVariableNameWriter

Modifier and Type	Method	Description
void	XmlConfidenceWriter.setTypeWriter(PsiXmlVariableNameWriter<CvTerm> typeWriter)	Setter for the field typeWriter.

Uses of PsiXmlVariableNameWriter in psidev.psi.mi.jami.xml.io.writer.elements.impl.xml30

Methods in psidev.psi.mi.jami.xml.io.writer.elements.impl.xml30 that return PsiXmlVariableNameWriter

Modifier and Type	Method	Description
PsiXmlVariableNameWriter<CvTerm>	XmlCausalRelationshipWriter.getCausalStatementWriter()	Getter for the field causalStatementWriter.
PsiXmlVariableNameWriter<CvTerm>	XmlCooperativityEvidenceWriter.getCvWriter()	Getter for the field cvWriter.
PsiXmlVariableNameWriter<CvTerm>	XmlVariableParameterWriter.getUnitWriter()	Getter for the field unitWriter.

Methods in psidev.psi.mi.jami.xml.io.writer.elements.impl.xml30 with parameters of type PsiXmlVariableNameWriter

Modifier and Type	Method	Description
void	XmlCausalRelationshipWriter.setCausalStatementWriter(PsiXmlVariableNameWriter<CvTerm> causalStatementWriter)	Setter for the field causalStatementWriter.
void	XmlCooperativityEvidenceWriter.setCvWriter(PsiXmlVariableNameWriter<CvTerm> cvWriter)	Setter for the field cvWriter.
void	XmlVariableParameterWriter.setUnitWriter(PsiXmlVariableNameWriter<CvTerm> unitWriter)	Setter for the field unitWriter.