java.lang.Object
- psidev.psi.mi.jami.model.impl.AbstractInteraction<T>
- - psidev.psi.mi.jami.binary.impl.AbstractBinaryInteraction<P>
  - - psidev.psi.mi.jami.xml.model.extension.binary.AbstractExtendedXmlBinaryInteraction<ParticipantEvidence>
    - - psidev.psi.mi.jami.xml.model.extension.binary.AbstractXmlBinaryInteractionEvidence
      - psidev.psi.mi.jami.xml.model.extension.binary.xml253.XmlBinaryInteractionEvidence

All Implemented Interfaces:

BinaryInteraction<ParticipantEvidence>, BinaryInteractionEvidence, FileSourceContext, Interaction<ParticipantEvidence>, InteractionEvidence, NamedInteraction<ParticipantEvidence>, ExtendedPsiXmlInteraction<ParticipantEvidence>, ExtendedPsiXmlInteractionEvidence, PsiXmlInteraction<ParticipantEvidence>
```
public class XmlBinaryInteractionEvidence
extends AbstractXmlBinaryInteractionEvidence
```
Xml implementation of BinaryInteractionEvidence
Since:
```
16/10/13
```
Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Nested Class Summary
- Nested classes/interfaces inherited from class psidev.psi.mi.jami.xml.model.extension.binary.AbstractXmlBinaryInteractionEvidence
  AbstractXmlBinaryInteractionEvidence.ExperimentalBinaryInteractionXrefList

Constructor Summary

Constructors
Constructor	Description
`XmlBinaryInteractionEvidence()`	Constructor for XmlBinaryInteractionEvidence.
`XmlBinaryInteractionEvidence(String shortName)`	Constructor for XmlBinaryInteractionEvidence.
`XmlBinaryInteractionEvidence(String shortName, CvTerm type)`	Constructor for XmlBinaryInteractionEvidence.
`XmlBinaryInteractionEvidence(String shortName, CvTerm type, CvTerm complexExpansion)`	Constructor for XmlBinaryInteractionEvidence.
`XmlBinaryInteractionEvidence(String shortName, CvTerm type, ParticipantEvidence participantA, ParticipantEvidence participantB)`	Constructor for XmlBinaryInteractionEvidence.
`XmlBinaryInteractionEvidence(String shortName, CvTerm type, ParticipantEvidence participantA, ParticipantEvidence participantB, CvTerm complexExpansion)`	Constructor for XmlBinaryInteractionEvidence.
`XmlBinaryInteractionEvidence(String shortName, ParticipantEvidence participantA, ParticipantEvidence participantB)`	Constructor for XmlBinaryInteractionEvidence.
`XmlBinaryInteractionEvidence(String shortName, ParticipantEvidence participantA, ParticipantEvidence participantB, CvTerm complexExpansion)`	Constructor for XmlBinaryInteractionEvidence.
`XmlBinaryInteractionEvidence(CvTerm complexExpansion)`	Constructor for XmlBinaryInteractionEvidence.
`XmlBinaryInteractionEvidence(ParticipantEvidence participantA, ParticipantEvidence participantB)`	Constructor for XmlBinaryInteractionEvidence.
`XmlBinaryInteractionEvidence(ParticipantEvidence participantA, ParticipantEvidence participantB, CvTerm complexExpansion)`	Constructor for XmlBinaryInteractionEvidence.

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type Method Description

void setImexId(CvTerm database, String id, CvTerm qualifier)
- Methods inherited from class psidev.psi.mi.jami.xml.model.extension.binary.AbstractXmlBinaryInteractionEvidence
  assignImexId, clearPropertiesLinkedToXrefs, getAvailability, getConfidences, getExperiment, getExperiments, getImexId, getOriginalExperiments, getParameters, getVariableParameterValues, getXmlAvailability, initialiseExperimentalConfidences, initialiseExperimentalParameters, initialiseVariableParameterValueSets, initialiseXrefs, isInferred, isModelled, isNegative, processAddedXrefEvent, processRemovedXrefEvent, setAvailability, setExperiment, setExperimentAndAddInteractionEvidence, setImexId, setInferred, setModelled, setNegative, setXmlAvailability, toString
- Methods inherited from class psidev.psi.mi.jami.xml.model.extension.binary.AbstractExtendedXmlBinaryInteraction
  getAliases, getEntry, getFullName, getId, getInferredInteractions, getInteractionType, getInteractionTypes, getSourceLocator, isIntraMolecular, setEntry, setFullName, setId, setInteractionType, setIntraMolecular, setSourceLocator
- Methods inherited from class psidev.psi.mi.jami.binary.impl.AbstractBinaryInteraction
  addAllParticipants, addParticipant, getCausalRegulatoryMechanism, getComplexExpansion, getParticipantA, getParticipantB, getParticipants, removeAllParticipants, removeParticipant, setCausalRegulatoryMechanism, setComplexExpansion, setParticipantA, setParticipantB
- Methods inherited from class psidev.psi.mi.jami.model.impl.AbstractInteraction
  clearPropertiesLinkedToChecksums, getAnnotations, getChecksums, getCreatedDate, getIdentifiers, getRigid, getShortName, getUpdatedDate, getXrefs, initialiseAnnotations, initialiseAnnotationsWith, initialiseChecksums, initialiseChecksumWith, initialiseIdentifiers, initialiseIdentifiersWith, initialiseParticipants, initialiseParticipantsWith, initialiseXrefsWith, processAddedChecksumEvent, processRemovedChecksumEvent, setCreatedDate, setRigid, setShortName, setUpdatedDate
- Methods inherited from class java.lang.Object
  clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait
- Methods inherited from interface psidev.psi.mi.jami.binary.BinaryInteraction
  getCausalRegulatoryMechanism, getComplexExpansion, getParticipantA, getParticipantB, setCausalRegulatoryMechanism, setComplexExpansion, setParticipantA, setParticipantB
- Methods inherited from interface psidev.psi.mi.jami.xml.model.extension.ExtendedPsiXmlInteraction
  getInferredInteractions, getInteractionTypes
- Methods inherited from interface psidev.psi.mi.jami.xml.model.extension.ExtendedPsiXmlInteractionEvidence
  getAliases
- Methods inherited from interface psidev.psi.mi.jami.datasource.FileSourceContext
  getSourceLocator, setSourceLocator
- Methods inherited from interface psidev.psi.mi.jami.model.Interaction
  addAllParticipants, addParticipant, getAnnotations, getChecksums, getCreatedDate, getIdentifiers, getInteractionType, getParticipants, getRigid, getShortName, getUpdatedDate, getXrefs, removeAllParticipants, removeParticipant, setCreatedDate, setInteractionType, setRigid, setShortName, setUpdatedDate
- Methods inherited from interface psidev.psi.mi.jami.model.NamedInteraction
  getFullName, setFullName
- Methods inherited from interface psidev.psi.mi.jami.xml.model.extension.PsiXmlInteraction
  getEntry, getId, isIntraMolecular, setEntry, setId, setIntraMolecular

Constructor Detail

XmlBinaryInteractionEvidence
```
public XmlBinaryInteractionEvidence()
```
Constructor for XmlBinaryInteractionEvidence.

XmlBinaryInteractionEvidence
```
public XmlBinaryInteractionEvidence(String shortName)
```
Constructor for XmlBinaryInteractionEvidence.

Parameters:

shortName - a String object.