Package psidev.psi.mi.jami.xml.model.extension

Interface ExtendedPsiXmlInteractionEvidence

All Superinterfaces:

ExtendedPsiXmlInteraction<ParticipantEvidence>, FileSourceContext, Interaction<ParticipantEvidence>, InteractionEvidence, NamedInteraction<ParticipantEvidence>, PsiXmlInteraction<ParticipantEvidence>

All Known Subinterfaces:

ExtendedPsiXmlInteractionEvidence

All Known Implementing Classes:

AbstractXmlBinaryInteractionEvidence, AbstractXmlInteractionEvidence, AbstractXmlInteractionEvidence, AbstractXmlInteractionEvidence, DefaultXmlInteractionEvidence, DefaultXmlInteractionEvidence, DefaultXmlInteractionEvidence, XmlBinaryInteractionEvidence, XmlBinaryInteractionEvidence, XmlBinaryInteractionEvidence, XmlBinaryInteractionEvidenceWrapper, XmlBinaryInteractionEvidenceWrapper, XmlInteractionEvidence, XmlInteractionEvidence, XmlInteractionEvidence

public interface ExtendedPsiXmlInteractionEvidence
extends ExtendedPsiXmlInteraction<ParticipantEvidence>, InteractionEvidence

Extended interaction evidence for PSI-XML 2,5 standards

Since:

29/10/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Method Summary

Modifier and Type	Method	Description
Collection<Alias>	getAliases()	getAliases.
List<Experiment>	getExperiments()	getExperiments.
List<ExtendedPsiXmlExperiment>	getOriginalExperiments()	getOriginalExperiments.
AbstractAvailability	getXmlAvailability()	getXmlAvailability.
boolean	isModelled()	isModelled.
void	setModelled(boolean modelled)	setModelled.
void	setXmlAvailability(AbstractAvailability availability)	setXmlAvailability.

Methods inherited from interface psidev.psi.mi.jami.xml.model.extension.ExtendedPsiXmlInteraction

getInferredInteractions, getInteractionTypes

Methods inherited from interface psidev.psi.mi.jami.datasource.FileSourceContext

getSourceLocator, setSourceLocator, toString

Methods inherited from interface psidev.psi.mi.jami.model.Interaction

addAllParticipants, addParticipant, getAnnotations, getChecksums, getCreatedDate, getIdentifiers, getInteractionType, getParticipants, getRigid, getShortName, getUpdatedDate, getXrefs, removeAllParticipants, removeParticipant, setCreatedDate, setInteractionType, setRigid, setShortName, setUpdatedDate

Methods inherited from interface psidev.psi.mi.jami.model.InteractionEvidence

assignImexId, getAvailability, getConfidences, getExperiment, getImexId, getParameters, getVariableParameterValues, isInferred, isNegative, setAvailability, setExperiment, setExperimentAndAddInteractionEvidence, setInferred, setNegative

Methods inherited from interface psidev.psi.mi.jami.model.NamedInteraction

getFullName, setFullName

Methods inherited from interface psidev.psi.mi.jami.xml.model.extension.PsiXmlInteraction

getEntry, getId, isIntraMolecular, setEntry, setId, setIntraMolecular

Method Detail

getXmlAvailability

AbstractAvailability getXmlAvailability()

getXmlAvailability.

Returns:

a AbstractAvailability object.

setXmlAvailability

void setXmlAvailability(AbstractAvailability availability)

setXmlAvailability.

Parameters:

availability - a AbstractAvailability object.

isModelled

boolean isModelled()

isModelled.

Returns:

a boolean.

setModelled

void setModelled(boolean modelled)

setModelled.

Parameters:

modelled - a boolean.

getExperiments

List<Experiment> getExperiments()

getExperiments.

Returns:

a List object.

getOriginalExperiments

List<ExtendedPsiXmlExperiment> getOriginalExperiments()

getOriginalExperiments.

Returns:

a List object.

getAliases

Collection<Alias> getAliases()

getAliases.

Specified by:

getAliases in interface ExtendedPsiXmlInteraction<ParticipantEvidence>

Specified by:

getAliases in interface NamedInteraction<ParticipantEvidence>

Specified by:

getAliases in interface PsiXmlInteraction<ParticipantEvidence>

Returns:

a Collection object.