Package psidev.psi.mi.jami.xml.model.extension.binary.xml30

Class XmlBinaryInteractionEvidenceWrapper

java.lang.Object

psidev.psi.mi.jami.xml.model.extension.binary.XmlBinaryInteractionEvidenceWrapper

psidev.psi.mi.jami.xml.model.extension.binary.xml30.XmlBinaryInteractionEvidenceWrapper

All Implemented Interfaces:

BinaryInteraction<ParticipantEvidence>, BinaryInteractionEvidence, FileSourceContext, Interaction<ParticipantEvidence>, InteractionEvidence, NamedInteraction<ParticipantEvidence>, ExtendedPsiXmlInteraction<ParticipantEvidence>, ExtendedPsiXmlInteractionEvidence, PsiXmlInteraction<ParticipantEvidence>, ExtendedPsiXmlInteractionEvidence

public class XmlBinaryInteractionEvidenceWrapper
extends XmlBinaryInteractionEvidenceWrapper
implements ExtendedPsiXmlInteractionEvidence

Xml implementation of BinaryInteractionWrapper with a source locator

Since:

16/10/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
XmlBinaryInteractionEvidenceWrapper(ExtendedPsiXmlInteractionEvidence interaction)	Constructor for XmlBinaryInteractionEvidenceWrapper.
XmlBinaryInteractionEvidenceWrapper(ExtendedPsiXmlInteractionEvidence interaction, CvTerm complexExpansion)	Constructor for XmlBinaryInteractionEvidenceWrapper.

Method Summary

Modifier and Type	Method	Description
List<ExtendedPsiXmlCausalRelationship>	getCausalRelationships()	getCausalRelationships.

Methods inherited from class psidev.psi.mi.jami.xml.model.extension.binary.XmlBinaryInteractionEvidenceWrapper

addAllParticipants, addParticipant, assignImexId, getAliases, getAnnotations, getAvailability, getCausalRegulatoryMechanism, getChecksums, getComplexExpansion, getConfidences, getCreatedDate, getEntry, getExperiment, getExperiments, getFullName, getId, getIdentifiers, getImexId, getInferredInteractions, getInteractionType, getInteractionTypes, getOriginalExperiments, getParameters, getParticipantA, getParticipantB, getParticipants, getRigid, getShortName, getSourceLocator, getUpdatedDate, getVariableParameterValues, getWrappedInteraction, getXmlAvailability, getXrefs, isInferred, isIntraMolecular, isModelled, isNegative, removeAllParticipants, removeParticipant, setAvailability, setCausalRegulatoryMechanism, setComplexExpansion, setCreatedDate, setEntry, setExperiment, setExperimentAndAddInteractionEvidence, setFullName, setId, setInferred, setInteractionType, setIntraMolecular, setModelled, setNegative, setParticipantA, setParticipantB, setRigid, setShortName, setSourceLocator, setUpdatedDate, setXmlAvailability, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface psidev.psi.mi.jami.xml.model.extension.ExtendedPsiXmlInteraction

getInferredInteractions, getInteractionTypes

Methods inherited from interface psidev.psi.mi.jami.xml.model.extension.ExtendedPsiXmlInteractionEvidence

getAliases, getExperiments, getOriginalExperiments, getXmlAvailability, isModelled, setModelled, setXmlAvailability

Methods inherited from interface psidev.psi.mi.jami.datasource.FileSourceContext

getSourceLocator, setSourceLocator, toString

Methods inherited from interface psidev.psi.mi.jami.model.Interaction

addAllParticipants, addParticipant, getAnnotations, getChecksums, getCreatedDate, getIdentifiers, getInteractionType, getParticipants, getRigid, getShortName, getUpdatedDate, getXrefs, removeAllParticipants, removeParticipant, setCreatedDate, setInteractionType, setRigid, setShortName, setUpdatedDate

Methods inherited from interface psidev.psi.mi.jami.model.InteractionEvidence

assignImexId, getAvailability, getConfidences, getExperiment, getImexId, getParameters, getVariableParameterValues, isInferred, isNegative, setAvailability, setExperiment, setExperimentAndAddInteractionEvidence, setInferred, setNegative

Methods inherited from interface psidev.psi.mi.jami.model.NamedInteraction

getFullName, setFullName

Methods inherited from interface psidev.psi.mi.jami.xml.model.extension.PsiXmlInteraction

getEntry, getId, isIntraMolecular, setEntry, setId, setIntraMolecular

Constructor Detail

XmlBinaryInteractionEvidenceWrapper

public XmlBinaryInteractionEvidenceWrapper(ExtendedPsiXmlInteractionEvidence interaction)

Constructor for XmlBinaryInteractionEvidenceWrapper.

Parameters:

interaction - a ExtendedPsiXmlInteractionEvidence object.

XmlBinaryInteractionEvidenceWrapper

public XmlBinaryInteractionEvidenceWrapper(ExtendedPsiXmlInteractionEvidence interaction,
                                           CvTerm complexExpansion)

Constructor for XmlBinaryInteractionEvidenceWrapper.

Parameters:

interaction - a ExtendedPsiXmlInteractionEvidence object.

complexExpansion - a CvTerm object.

Method Detail

getCausalRelationships

public List<ExtendedPsiXmlCausalRelationship> getCausalRelationships()

getCausalRelationships.

Specified by:

getCausalRelationships in interface ExtendedPsiXmlInteractionEvidence

Returns:

a List object.