Package psidev.psi.mi.jami.xml.model.extension.xml300

Class XmlModelledParticipantPool

java.lang.Object

psidev.psi.mi.jami.xml.model.extension.xml300.AbstractXmlParticipantPool<ModelledInteraction,ModelledFeature,ModelledParticipantCandidate>

psidev.psi.mi.jami.xml.model.extension.xml300.XmlModelledParticipantPool

All Implemented Interfaces:

Iterable<ModelledParticipantCandidate>, Collection<ModelledParticipantCandidate>, EventListener, FileSourceContext, EntityInteractorChangeListener, Entity<ModelledFeature>, ModelledEntity, ModelledParticipant, ModelledParticipantPool, NamedParticipant<ModelledInteraction,ModelledFeature>, Participant<ModelledInteraction,ModelledFeature>, ParticipantPool<ModelledInteraction,ModelledFeature,ModelledParticipantCandidate>, ExtendedPsiXmlEntity<ModelledFeature>

public class XmlModelledParticipantPool
extends AbstractXmlParticipantPool<ModelledInteraction,ModelledFeature,ModelledParticipantCandidate>
implements ModelledParticipantPool

Xml implementation of participant pool

Since:

02/09/14

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Field Summary

Fields inherited from interface psidev.psi.mi.jami.model.Participant

ACCEPTOR_ROLE, ACCEPTOR_ROLE_MI, BAIT_ROLE, BAIT_ROLE_MI, DONOR_ROLE, DONOR_ROLE_MI, ELECTRON_ACCEPTOR_ROLE, ELECTRON_ACCEPTOR_ROLE_MI, ELECTRON_DONOR_ROLE, ELECTRON_DONOR_ROLE_MI, ENZYME_REGULATOR_ROLE, ENZYME_REGULATOR_ROLE_MI, ENZYME_ROLE, ENZYME_ROLE_MI, ENZYME_TARGET_ROLE, ENZYME_TARGET_ROLE_MI, FLUORESCENCE_ACCEPTOR_ROLE, FLUORESCENCE_ACCEPTOR_ROLE_MI, FLUORESCENCE_DONOR_ROLE, FLUORESCENCE_DONOR_ROLE_MI, INHIBITED, INHIBITED_MI, INHIBITOR, INHIBITOR_MI, NEUTRAL, NEUTRAL_MI, PHOSPHATE_ACCEPTOR_ROLE, PHOSPHATE_ACCEPTOR_ROLE_MI, PHOSPHATE_DONOR_ROLE, PHOSPHATE_DONOR_ROLE_MI, PHOTON_ACCEPTOR_ROLE, PHOTON_ACCEPTOR_ROLE_MI, PHOTON_DONOR_ROLE, PHOTON_DONOR_ROLE_MI, PREDETERMINED, PREDETERMINED_MI, PREY, PREY_MI, PUTATIVE_SELF_ROLE, PUTATIVE_SELF_ROLE_MI, SELF_ROLE, SELF_ROLE_MI, SUPPRESSED_GENE_ROLE, SUPPRESSED_GENE_ROLE_MI, SUPPRESSOR_GENE_ROLE, SUPPRESSOR_GENE_ROLE_MI, UNSPECIFIED_ROLE, UNSPECIFIED_ROLE_MI

Constructor Summary

Constructors

Constructor	Description
XmlModelledParticipantPool()	Constructor for XmlModelledParticipantPool.
XmlModelledParticipantPool(AbstractXmlParticipant<ModelledInteraction,ModelledFeature> delegate)	Constructor for XmlModelledParticipantPool.

Method Summary

Modifier and Type	Method	Description
protected void	initialiseDefaultDelegate()	initialiseDefaultDelegate.
void	setId(int id)	setId.

Methods inherited from class psidev.psi.mi.jami.xml.model.extension.xml300.AbstractXmlParticipantPool

add, addAll, addAllFeatures, addFeature, clear, contains, containsAll, getAliases, getAnnotations, getBiologicalEffect, getBiologicalRole, getCausalRelationships, getChangeListener, getDelegate, getFeatures, getFullName, getId, getInteraction, getInteractor, getJAXBInteractorCandidates, getShortName, getSourceLocator, getStoichiometry, getType, getXrefs, initialiseComponentCandidatesSet, initialiseComponentCandidatesSetWith, isEmpty, iterator, onInteractorUpdate, remove, removeAll, removeAllFeatures, removeFeature, retainAll, setBiologicalEffect, setBiologicalRole, setChangeListener, setDelegate, setFullName, setInteraction, setInteractionAndAddParticipant, setInteractor, setJAXBType, setShortName, setSourceLocator, setStoichiometry, setStoichiometry, setType, size, toArray, toArray

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface java.util.Collection

add, addAll, clear, contains, containsAll, equals, hashCode, isEmpty, iterator, parallelStream, remove, removeAll, removeIf, retainAll, size, spliterator, stream, toArray, toArray, toArray

Methods inherited from interface psidev.psi.mi.jami.model.Entity

addAllFeatures, addFeature, getCausalRelationships, getChangeListener, getFeatures, getInteractor, getStoichiometry, removeAllFeatures, removeFeature, setChangeListener, setInteractor, setStoichiometry, setStoichiometry

Methods inherited from interface psidev.psi.mi.jami.datasource.FileSourceContext

toString

Methods inherited from interface java.lang.Iterable

forEach

Methods inherited from interface psidev.psi.mi.jami.model.Participant

getAliases, getAnnotations, getBiologicalEffect, getBiologicalRole, getInteraction, getXrefs, setBiologicalEffect, setBiologicalRole, setInteraction, setInteractionAndAddParticipant

Methods inherited from interface psidev.psi.mi.jami.model.ParticipantPool

getType, setType

Constructor Detail

XmlModelledParticipantPool

public XmlModelledParticipantPool()

Constructor for XmlModelledParticipantPool.

XmlModelledParticipantPool

public XmlModelledParticipantPool(AbstractXmlParticipant<ModelledInteraction,ModelledFeature> delegate)

Constructor for XmlModelledParticipantPool.

Parameters:

delegate - a AbstractXmlParticipant object.

Method Detail

initialiseDefaultDelegate

protected void initialiseDefaultDelegate()

initialiseDefaultDelegate.

Specified by:

initialiseDefaultDelegate in class AbstractXmlParticipantPool<ModelledInteraction,ModelledFeature,ModelledParticipantCandidate>

setId

public void setId(int id)

setId.

Specified by:

setId in interface ExtendedPsiXmlEntity<ModelledFeature>

Overrides:

setId in class AbstractXmlParticipantPool<ModelledInteraction,ModelledFeature,ModelledParticipantCandidate>

Parameters:

id - a int.