Uses of Interface
psidev.psi.mi.jami.datasource.InteractionSource

Packages that use InteractionSource

Package	Description
psidev.psi.mi.jami.crosslink.extension.datasource
psidev.psi.mi.jami.datasource
psidev.psi.mi.jami.tab.extension.datasource
psidev.psi.mi.jami.xml.model.extension.datasource

Uses of InteractionSource in psidev.psi.mi.jami.crosslink.extension.datasource

Subinterfaces of InteractionSource in psidev.psi.mi.jami.crosslink.extension.datasource

Modifier and Type	Interface	Description
interface	CsvSource<I extends InteractionEvidence>	Interface for Crosslink CSV sources that can parse full CSV files

Classes in psidev.psi.mi.jami.crosslink.extension.datasource that implement InteractionSource

Modifier and Type	Class	Description
class	AbstractCsvSource<T extends InteractionEvidence>	Abstract class for an InteractionSource coming from a Crosslink CSV file.
class	CsvBinaryEvidenceSource	CrossLink CVS source of binary interaction evidences
class	CsvEvidenceSource	CrossLink CVS source of interaction evidences
class	CsvMixedEvidenceSource	This class is a source that can build a mix of n-ary interaction evidences/binary from a Crosslink csv file depending on the bait column to rebuild the original n-ary interaction
class	CsvNaryEvidenceSource	This class is a source that can build a n-ary interaction evidence from a full Crosslink csv file

Uses of InteractionSource in psidev.psi.mi.jami.datasource

Subinterfaces of InteractionSource in psidev.psi.mi.jami.datasource

Modifier and Type	Interface	Description
interface	BinaryInteractionEvidenceSource	A dataSource of binary interaction evidences It gives full access to all the interactions using Iterator or the full collection.
interface	BinaryInteractionSource<T extends BinaryInteraction>	A Data source of binary interactions.
interface	ComplexSource	A Data source of biological complexes.
interface	InteractionEvidenceSource<T extends InteractionEvidence>	A Data source of interaction evidences.
interface	ModelledBinaryInteractionSource	A Data source of modelled binary interactions.
interface	ModelledInteractionSource<T extends ModelledInteraction>	A Data source of modelled interactions.

Uses of InteractionSource in psidev.psi.mi.jami.tab.extension.datasource

Subinterfaces of InteractionSource in psidev.psi.mi.jami.tab.extension.datasource

Modifier and Type	Interface	Description
interface	MitabSource<I extends Interaction>	Interface for MITAB sources that can parse full MITAB files

Classes in psidev.psi.mi.jami.tab.extension.datasource that implement InteractionSource

Modifier and Type	Class	Description
class	AbstractMitabSource<T extends Interaction,P extends Participant,F extends Feature>	Abstract class for an InteractionSource coming from a MITAB file.
class	DefaultMitabSource	Abstract class for an InteractionSource coming from a MITAB file.
class	LightMitabBinarySource	A mitab datasource that loads very basic binary interactions and ignore experimental details, source, confidence and experimental details.
class	LightMitabSource	A mitab datasource that loads very basic interactions and ignore experimental details, source, confidence and experimental details It will load the full interaction set.
class	MitabBinaryEvidenceSource	A mitab datasource that loads interaction evidences (full experimental details).
class	MitabEvidenceSource	A mitab datasource that loads interaction evidences (full experimental details) It will load the full interaction dataset
class	MitabModelledBinarySource	A mitab datasource that loads modelled binary interactions and ignore experimental details.
class	MitabModelledSource	A mitab datasource that loads modelled interactions and ignore experimental details It will load the full interaction dataset.

Uses of InteractionSource in psidev.psi.mi.jami.xml.model.extension.datasource

Subinterfaces of InteractionSource in psidev.psi.mi.jami.xml.model.extension.datasource

Modifier and Type	Interface	Description
interface	PsiXmlSource<I extends Interaction>	Interface for PSI-MI XML sources that can parse full PSI-MI XML files

Classes in psidev.psi.mi.jami.xml.model.extension.datasource that implement InteractionSource

Modifier and Type	Class	Description
class	AbstractPsiXmlBinarySource<T extends Interaction,B extends BinaryInteraction>	Abstract class for Psi-XML binary interaction data source which loads the full interaction dataset
class	AbstractPsiXmlSource<T extends Interaction>	Abstract class for a PSI-XML datasource that loads the full interaction dataset
class	DefaultPsiXmlSource	Generic class for PSI-XML full datasource.
class	LightXmlBinarySource	PSI-XML data source that provides light binary interactions (no experimental details).
class	LightXmlSource	PSI-XML data source that provides light interactions (no experimental details).
class	XmlBinaryEvidenceSource	PSI-XML data source that provides binary interactions evidence (full experimental details).
class	XmlBinarySource	PSI-XML data source that provides binary interactions (mixed of abstract interactions and interaction evidences).
class	XmlComplexSource	PSI-XML data source that provides abstract interactions (ignore full experimental details).
class	XmlEvidenceSource	PSI-XML data source that provides interaction evidences (with full experimental details).
class	XmlModelledBinarySource	PSI-XML data source that provides modelled binary interactions (ignore experimental details).
class	XmlModelledSource	PSI-XML data source that provides abstract interactions (ignore full experimental details).
class	XmlSource	PSI-XML data source that provides interactions (mix of abstract interactions and interaction evidences).