Uses of Interface
psidev.psi.mi.jami.model.CausalRelationship

Packages that use CausalRelationship

Package	Description
psidev.psi.mi.jami.enricher.listener.impl
psidev.psi.mi.jami.enricher.listener.impl.writer
psidev.psi.mi.jami.enricher.util
psidev.psi.mi.jami.listener
psidev.psi.mi.jami.listener.impl
psidev.psi.mi.jami.model
psidev.psi.mi.jami.model.impl
psidev.psi.mi.jami.tab.extension
psidev.psi.mi.jami.utils.comparator.participant
psidev.psi.mi.jami.xml.io.writer.elements
psidev.psi.mi.jami.xml.io.writer.elements.impl.xml30
psidev.psi.mi.jami.xml.model.extension.xml253
psidev.psi.mi.jami.xml.model.extension.xml254
psidev.psi.mi.jami.xml.model.extension.xml300
psidev.psi.mi.jami.xml.model.reference.xml253
psidev.psi.mi.jami.xml.model.reference.xml254
psidev.psi.mi.jami.xml.model.reference.xml300

Uses of CausalRelationship in psidev.psi.mi.jami.enricher.listener.impl

Methods in psidev.psi.mi.jami.enricher.listener.impl with parameters of type CausalRelationship

Modifier and Type	Method	Description
void	EntityEnricherListenerManager.onAddedCausalRelationship(P participant, CausalRelationship added)	onAddedCausalRelationship
void	EntityEnricherListenerManager.onRemovedCausalRelationship(P participant, CausalRelationship removed)	onRemovedCausalRelationship

Uses of CausalRelationship in psidev.psi.mi.jami.enricher.listener.impl.writer

Methods in psidev.psi.mi.jami.enricher.listener.impl.writer with parameters of type CausalRelationship

Modifier and Type	Method	Description
void	EntityEnricherStatisticsWriter.onAddedCausalRelationship(P participant, CausalRelationship added)	onAddedCausalRelationship
void	EntityEnricherStatisticsWriter.onRemovedCausalRelationship(P participant, CausalRelationship removed)	onRemovedCausalRelationship

Uses of CausalRelationship in psidev.psi.mi.jami.enricher.util

Method parameters in psidev.psi.mi.jami.enricher.util with type arguments of type CausalRelationship

Modifier and Type	Method	Description
static void	EnricherUtils.mergeCausalRelationships(Entity termToEnrich, Collection<CausalRelationship> toEnrichRelationships, Collection<CausalRelationship> fetchedRelationships, boolean remove, EntityChangeListener entityListener)	mergeCausalRelationships.

Uses of CausalRelationship in psidev.psi.mi.jami.listener

Methods in psidev.psi.mi.jami.listener with parameters of type CausalRelationship

Modifier and Type	Method	Description
void	EntityChangeListener.onAddedCausalRelationship(F participant, CausalRelationship added)	onAddedCausalRelationship
void	EntityChangeListener.onRemovedCausalRelationship(F participant, CausalRelationship removed)	onRemovedCausalRelationship

Uses of CausalRelationship in psidev.psi.mi.jami.listener.impl

Methods in psidev.psi.mi.jami.listener.impl with parameters of type CausalRelationship

Modifier and Type	Method	Description
void	EntityChangeLogger.onAddedCausalRelationship(T entity, CausalRelationship added)	onAddedCausalRelationship
void	ParticipantChangeLogger.onAddedCausalRelationship(T entity, CausalRelationship added)	onAddedCausalRelationship
void	EntityChangeLogger.onRemovedCausalRelationship(T entity, CausalRelationship removed)	onRemovedCausalRelationship
void	ParticipantChangeLogger.onRemovedCausalRelationship(T entity, CausalRelationship removed)	onRemovedCausalRelationship

Uses of CausalRelationship in psidev.psi.mi.jami.model

Methods in psidev.psi.mi.jami.model with type parameters of type CausalRelationship

Modifier and Type	Method	Description
<C extends CausalRelationship> Collection<C>	Entity.getCausalRelationships()	The causal relationships of this entity on other entities usually part of an interaction.

Uses of CausalRelationship in psidev.psi.mi.jami.model.impl

Classes in psidev.psi.mi.jami.model.impl that implement CausalRelationship

Modifier and Type	Class	Description
class	DefaultCausalRelationship	Default implementation for CausalRelationship Notes: The equals and hashcode methods have NOT been overridden because the CausalRelationship object is a complex object.

Methods in psidev.psi.mi.jami.model.impl that return types with arguments of type CausalRelationship

Modifier and Type	Method	Description
Collection<CausalRelationship>	AbstractEntity.getCausalRelationships()	Getter for the field causalRelationships.

Method parameters in psidev.psi.mi.jami.model.impl with type arguments of type CausalRelationship

Modifier and Type	Method	Description
protected void	AbstractEntity.initialiseCausalRelationshipsWith(Collection<CausalRelationship> relationships)	initialiseCausalRelationshipsWith

Uses of CausalRelationship in psidev.psi.mi.jami.tab.extension

Classes in psidev.psi.mi.jami.tab.extension that implement CausalRelationship

Modifier and Type	Class	Description
class	MitabCausalRelationship

Uses of CausalRelationship in psidev.psi.mi.jami.utils.comparator.participant

Methods in psidev.psi.mi.jami.utils.comparator.participant with parameters of type CausalRelationship

Modifier and Type	Method	Description
static boolean	DefaultCausalRelationshipComparator.areEquals(CausalRelationship causalRelationship1, CausalRelationship causalRelationship2)	Use DefaultCausalRelationshipComparator to know if two causalRelationShip are equals.
static boolean	DefaultExactCausalRelationshipComparator.areEquals(CausalRelationship rel1, CausalRelationship rel2)	Use DefaultExactCausalRelationshipComparator to know if two causalRelationShip are equals.
static boolean	UnambiguousCausalRelationshipComparator.areEquals(CausalRelationship rel1, CausalRelationship rel2)	Use UnambiguousCausalRelationshipComparator to know if two causalRelationShip are equals.
static boolean	UnambiguousExactCausalRelationshipComparator.areEquals(CausalRelationship rel1, CausalRelationship rel2)	Use UnambiguousExactCausalRelationshipComparator to know if two causalRelationShip are equals.
int	CausalRelationshipComparator.compare(CausalRelationship causalRelationship1, CausalRelationship causalRelationship2)	It will first compare the relationType using AbstractCvTermComparator.
int	UnambiguousCausalRelationshipComparator.compare(CausalRelationship rel1, CausalRelationship rel2)	It will first compare the relationType using UnambiguousCvTermComparator.
int	UnambiguousExactCausalRelationshipComparator.compare(CausalRelationship rel1, CausalRelationship rel2)	It will first compare the relationType using UnambiguousCvTermComparator.
static int	UnambiguousCausalRelationshipComparator.hashCode(CausalRelationship rel)	hashCode
static int	UnambiguousExactCausalRelationshipComparator.hashCode(CausalRelationship rel)	hashCode

Uses of CausalRelationship in psidev.psi.mi.jami.xml.io.writer.elements

Methods in psidev.psi.mi.jami.xml.io.writer.elements with parameters of type CausalRelationship

Modifier and Type	Method	Description
void	PsiXmlCausalRelationshipWriter.write(CausalRelationship object, Participant source)	write.

Uses of CausalRelationship in psidev.psi.mi.jami.xml.io.writer.elements.impl.xml30

Methods in psidev.psi.mi.jami.xml.io.writer.elements.impl.xml30 with parameters of type CausalRelationship

Modifier and Type	Method	Description
void	XmlCausalRelationshipWriter.write(CausalRelationship object, Participant source)	write.
protected void	XmlCausalRelationshipWriter.writeCausalStatement(CausalRelationship object)	writeCausalStatement.
protected void	XmlCausalRelationshipWriter.writeSource(CausalRelationship object, Participant source)	writeSource.
protected void	XmlCausalRelationshipWriter.writeTarget(CausalRelationship object)	writeTarget.

Uses of CausalRelationship in psidev.psi.mi.jami.xml.model.extension.xml253

Methods in psidev.psi.mi.jami.xml.model.extension.xml253 that return types with arguments of type CausalRelationship

Modifier and Type	Method	Description
Collection<CausalRelationship>	AbstractXmlEntity.getCausalRelationships()	Getter for the field causalRelationships.
Collection<CausalRelationship>	AbstractXmlParticipantPool.getCausalRelationships()	The causal relationships of this entity on other entities usually part of an interaction.
Collection<CausalRelationship>	XmlExperimentalParticipantCandidateWrapper.getCausalRelationships()	The causal relationships of this entity on other entities usually part of an interaction.
Collection<CausalRelationship>	XmlParticipantCandidateWrapper.getCausalRelationships()	The causal relationships of this entity on other entities usually part of an interaction.
Collection<CausalRelationship>	XmlParticipantEvidenceWrapper.getCausalRelationships()	The causal relationships of this entity on other entities usually part of an interaction.
Collection<CausalRelationship>	XmlParticipantWrapper.getCausalRelationships()	The causal relationships of this entity on other entities usually part of an interaction.

Uses of CausalRelationship in psidev.psi.mi.jami.xml.model.extension.xml254

Methods in psidev.psi.mi.jami.xml.model.extension.xml254 that return types with arguments of type CausalRelationship

Modifier and Type	Method	Description
Collection<CausalRelationship>	AbstractXmlEntity.getCausalRelationships()	Getter for the field causalRelationships.
Collection<CausalRelationship>	AbstractXmlParticipantPool.getCausalRelationships()	The causal relationships of this entity on other entities usually part of an interaction.
Collection<CausalRelationship>	XmlExperimentalParticipantCandidateWrapper.getCausalRelationships()	The causal relationships of this entity on other entities usually part of an interaction.
Collection<CausalRelationship>	XmlParticipantCandidateWrapper.getCausalRelationships()	The causal relationships of this entity on other entities usually part of an interaction.
Collection<CausalRelationship>	XmlParticipantEvidenceWrapper.getCausalRelationships()	The causal relationships of this entity on other entities usually part of an interaction.
Collection<CausalRelationship>	XmlParticipantWrapper.getCausalRelationships()	The causal relationships of this entity on other entities usually part of an interaction.

Uses of CausalRelationship in psidev.psi.mi.jami.xml.model.extension.xml300

Subinterfaces of CausalRelationship in psidev.psi.mi.jami.xml.model.extension.xml300

Modifier and Type	Interface	Description
interface	ExtendedPsiXmlCausalRelationship	Extended causal relationship for XML 3.0.

Classes in psidev.psi.mi.jami.xml.model.extension.xml300 that implement CausalRelationship

Modifier and Type	Class	Description
class	XmlCausalRelationship	XML 3.0 implementation of causal relationship

Methods in psidev.psi.mi.jami.xml.model.extension.xml300 that return types with arguments of type CausalRelationship

Modifier and Type	Method	Description
Collection<CausalRelationship>	AbstractXmlEntity.getCausalRelationships()	Getter for the field causalRelationships.
Collection<CausalRelationship>	AbstractXmlParticipantPool.getCausalRelationships()	The causal relationships of this entity on other entities usually part of an interaction.
Collection<CausalRelationship>	XmlExperimentalParticipantCandidateWrapper.getCausalRelationships()	The causal relationships of this entity on other entities usually part of an interaction.
Collection<CausalRelationship>	XmlParticipantCandidateWrapper.getCausalRelationships()	The causal relationships of this entity on other entities usually part of an interaction.
Collection<CausalRelationship>	XmlParticipantEvidenceWrapper.getCausalRelationships()	The causal relationships of this entity on other entities usually part of an interaction.
Collection<CausalRelationship>	XmlParticipantWrapper.getCausalRelationships()	The causal relationships of this entity on other entities usually part of an interaction.

Uses of CausalRelationship in psidev.psi.mi.jami.xml.model.reference.xml253

Methods in psidev.psi.mi.jami.xml.model.reference.xml253 that return types with arguments of type CausalRelationship

Modifier and Type	Method	Description
Collection<CausalRelationship>	AbstractEntityRef.getCausalRelationships()	getCausalRelationships.

Uses of CausalRelationship in psidev.psi.mi.jami.xml.model.reference.xml254

Methods in psidev.psi.mi.jami.xml.model.reference.xml254 that return types with arguments of type CausalRelationship

Modifier and Type	Method	Description
Collection<CausalRelationship>	AbstractEntityRef.getCausalRelationships()	getCausalRelationships.

Uses of CausalRelationship in psidev.psi.mi.jami.xml.model.reference.xml300

Methods in psidev.psi.mi.jami.xml.model.reference.xml300 that return types with arguments of type CausalRelationship

Modifier and Type	Method	Description
Collection<CausalRelationship>	AbstractEntityRef.getCausalRelationships()	getCausalRelationships.