Package psidev.psi.mi.jami.xml.model.extension.xml253

Class DefaultXmlInteractionEvidence

java.lang.Object

psidev.psi.mi.jami.xml.model.extension.xml253.AbstractXmlInteraction<T>

psidev.psi.mi.jami.xml.model.extension.xml253.AbstractPsiXmlInteraction<ParticipantEvidence>

psidev.psi.mi.jami.xml.model.extension.xml253.AbstractXmlInteractionEvidence

psidev.psi.mi.jami.xml.model.extension.xml253.DefaultXmlInteractionEvidence

All Implemented Interfaces:

com.sun.xml.bind.Locatable, FileSourceContext, Interaction<ParticipantEvidence>, InteractionEvidence, NamedInteraction<ParticipantEvidence>, ExtendedPsiXmlInteraction<ParticipantEvidence>, ExtendedPsiXmlInteractionEvidence, PsiXmlInteraction<ParticipantEvidence>

public class DefaultXmlInteractionEvidence
extends AbstractXmlInteractionEvidence

Xml implementation of InteractionEvidence

Since:

08/10/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Nested Class Summary

Nested classes/interfaces inherited from class psidev.psi.mi.jami.xml.model.extension.xml253.AbstractXmlInteractionEvidence

AbstractXmlInteractionEvidence.JAXBConfidenceWrapper, AbstractXmlInteractionEvidence.JAXBExperimentWrapper, AbstractXmlInteractionEvidence.JAXBParameterWrapper, AbstractXmlInteractionEvidence.JAXBParticipantWrapper

Nested classes/interfaces inherited from class psidev.psi.mi.jami.xml.model.extension.xml253.AbstractPsiXmlInteraction

AbstractPsiXmlInteraction.JAXBInferredInteractionWrapper

Nested classes/interfaces inherited from class psidev.psi.mi.jami.xml.model.extension.xml253.AbstractXmlInteraction

AbstractXmlInteraction.JAXBAttributeWrapper

Field Summary

Fields inherited from class psidev.psi.mi.jami.xml.model.extension.xml253.AbstractXmlInteractionEvidence

locator

Constructor Summary

Constructors

Constructor	Description
DefaultXmlInteractionEvidence()	Constructor for DefaultXmlInteractionEvidence.
DefaultXmlInteractionEvidence(String shortName)	Constructor for DefaultXmlInteractionEvidence.
DefaultXmlInteractionEvidence(String shortName, CvTerm type)	Constructor for DefaultXmlInteractionEvidence.

Method Summary

Methods inherited from class psidev.psi.mi.jami.xml.model.extension.xml253.AbstractXmlInteractionEvidence

assignImexId, getAvailability, getConfidences, getExperiment, getExperiments, getImexId, getInteractionTypes, getJAXBConfidenceWrapper, getJAXBExperimentWrapper, getJAXBParameterWrapper, getOriginalExperiments, getParameters, getSourceLocator, getVariableParameterValues, getXmlAvailability, initialiseConfidenceWrapper, initialiseParameterWrapper, initialiseParticipantWrapper, initialiseVariableParameterValueSets, isInferred, isModelled, isNegative, processAddedParticipant, setAvailability, setExperiment, setExperimentAndAddInteractionEvidence, setInferred, setInteractionNamesContainer, setInteractionXrefContainer, setJAXBAttributeWrapper, setJAXBAvailability, setJAXBAvailabilityRef, setJAXBConfidenceWrapper, setJAXBExperimentWrapper, setJAXBId, setJAXBImexId, setJAXBInferredInteractionWrapper, setJAXBIntraMolecular, setJAXBModelled, setJAXBNegative, setJAXBParameterWrapper, setJAXBParticipantWrapper, setModelled, setNegative, setXmlAvailability

Methods inherited from class psidev.psi.mi.jami.xml.model.extension.xml253.AbstractPsiXmlInteraction

getInferredInteractions, getInteractionType, setInteractionType

Methods inherited from class psidev.psi.mi.jami.xml.model.extension.xml253.AbstractXmlInteraction

addAllParticipants, addParticipant, assignComplexAc, getAliases, getAnnotations, getAttributeWrapper, getChecksums, getComplexAc, getComplexVersion, getCreatedDate, getEntry, getFullName, getId, getIdentifiers, getInteractionNamesContainer, getInteractionXrefContainer, getParticipants, getRigid, getShortName, getUpdatedDate, getXrefs, initialiseAnnotationWrapper, initialiseNamesContainer, isIntraMolecular, removeAllParticipants, removeParticipant, setCreatedDate, setEntry, setFullName, setId, setIntraMolecular, setParticipantWrapper, setRigid, setShortName, setSourceLocator, setUpdatedDate, sourceLocation, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface psidev.psi.mi.jami.xml.model.extension.ExtendedPsiXmlInteraction

getInferredInteractions

Methods inherited from interface psidev.psi.mi.jami.xml.model.extension.ExtendedPsiXmlInteractionEvidence

getAliases

Methods inherited from interface psidev.psi.mi.jami.datasource.FileSourceContext

setSourceLocator, toString

Methods inherited from interface psidev.psi.mi.jami.model.Interaction

addAllParticipants, addParticipant, getAnnotations, getChecksums, getCreatedDate, getIdentifiers, getInteractionType, getParticipants, getRigid, getShortName, getUpdatedDate, getXrefs, removeAllParticipants, removeParticipant, setCreatedDate, setInteractionType, setRigid, setShortName, setUpdatedDate

Methods inherited from interface psidev.psi.mi.jami.model.NamedInteraction

getFullName, setFullName

Methods inherited from interface psidev.psi.mi.jami.xml.model.extension.PsiXmlInteraction

getEntry, getId, isIntraMolecular, setEntry, setId, setIntraMolecular

Constructor Detail

DefaultXmlInteractionEvidence

public DefaultXmlInteractionEvidence()

Constructor for DefaultXmlInteractionEvidence.

DefaultXmlInteractionEvidence

public DefaultXmlInteractionEvidence(String shortName)

Constructor for DefaultXmlInteractionEvidence.

Parameters:

shortName - a String object.

DefaultXmlInteractionEvidence

public DefaultXmlInteractionEvidence(String shortName,
                                     CvTerm type)

Constructor for DefaultXmlInteractionEvidence.

Parameters:

shortName - a String object.

type - a CvTerm object.