Package psidev.psi.mi.jami.xml.model.extension.xml253

Class XmlInteractionEvidence

java.lang.Object

psidev.psi.mi.jami.xml.model.extension.xml253.AbstractXmlInteraction<T>

psidev.psi.mi.jami.xml.model.extension.xml253.AbstractPsiXmlInteraction<ParticipantEvidence>

psidev.psi.mi.jami.xml.model.extension.xml253.AbstractXmlInteractionEvidence

psidev.psi.mi.jami.xml.model.extension.xml253.XmlInteractionEvidence

All Implemented Interfaces:

com.sun.xml.bind.Locatable, FileSourceContext, Interaction<ParticipantEvidence>, InteractionEvidence, NamedInteraction<ParticipantEvidence>, ExtendedPsiXmlInteraction<ParticipantEvidence>, ExtendedPsiXmlInteractionEvidence, PsiXmlInteraction<ParticipantEvidence>

public class XmlInteractionEvidence
extends AbstractXmlInteractionEvidence

Xml implementation of InteractionEvidence

Since:

08/10/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Nested Class Summary

Nested classes/interfaces inherited from class psidev.psi.mi.jami.xml.model.extension.xml253.AbstractXmlInteractionEvidence

AbstractXmlInteractionEvidence.JAXBConfidenceWrapper, AbstractXmlInteractionEvidence.JAXBExperimentWrapper, AbstractXmlInteractionEvidence.JAXBParameterWrapper, AbstractXmlInteractionEvidence.JAXBParticipantWrapper

Nested classes/interfaces inherited from class psidev.psi.mi.jami.xml.model.extension.xml253.AbstractPsiXmlInteraction

AbstractPsiXmlInteraction.JAXBInferredInteractionWrapper

Nested classes/interfaces inherited from class psidev.psi.mi.jami.xml.model.extension.xml253.AbstractXmlInteraction

AbstractXmlInteraction.JAXBAttributeWrapper

Field Summary

Fields inherited from class psidev.psi.mi.jami.xml.model.extension.xml253.AbstractXmlInteractionEvidence

locator

Constructor Summary

Constructors

Constructor	Description
XmlInteractionEvidence()	Constructor for XmlInteractionEvidence.
XmlInteractionEvidence(String shortName)	Constructor for XmlInteractionEvidence.
XmlInteractionEvidence(String shortName, CvTerm type)	Constructor for XmlInteractionEvidence.

Method Summary

Methods inherited from class psidev.psi.mi.jami.xml.model.extension.xml253.AbstractXmlInteractionEvidence

assignImexId, getAvailability, getConfidences, getExperiment, getExperiments, getImexId, getInteractionTypes, getJAXBConfidenceWrapper, getJAXBExperimentWrapper, getJAXBParameterWrapper, getOriginalExperiments, getParameters, getSourceLocator, getVariableParameterValues, getXmlAvailability, initialiseConfidenceWrapper, initialiseParameterWrapper, initialiseParticipantWrapper, initialiseVariableParameterValueSets, isInferred, isModelled, isNegative, processAddedParticipant, setAvailability, setExperiment, setExperimentAndAddInteractionEvidence, setInferred, setInteractionNamesContainer, setInteractionXrefContainer, setJAXBAttributeWrapper, setJAXBAvailability, setJAXBAvailabilityRef, setJAXBConfidenceWrapper, setJAXBExperimentWrapper, setJAXBId, setJAXBImexId, setJAXBInferredInteractionWrapper, setJAXBIntraMolecular, setJAXBModelled, setJAXBNegative, setJAXBParameterWrapper, setJAXBParticipantWrapper, setModelled, setNegative, setXmlAvailability

Methods inherited from class psidev.psi.mi.jami.xml.model.extension.xml253.AbstractPsiXmlInteraction

getInferredInteractions, getInteractionType, setInteractionType

Methods inherited from class psidev.psi.mi.jami.xml.model.extension.xml253.AbstractXmlInteraction

addAllParticipants, addParticipant, assignComplexAc, getAliases, getAnnotations, getAttributeWrapper, getChecksums, getComplexAc, getComplexVersion, getCreatedDate, getEntry, getFullName, getId, getIdentifiers, getInteractionNamesContainer, getInteractionXrefContainer, getParticipants, getRigid, getShortName, getUpdatedDate, getXrefs, initialiseAnnotationWrapper, initialiseNamesContainer, isIntraMolecular, removeAllParticipants, removeParticipant, setCreatedDate, setEntry, setFullName, setId, setIntraMolecular, setParticipantWrapper, setRigid, setShortName, setSourceLocator, setUpdatedDate, sourceLocation, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface psidev.psi.mi.jami.xml.model.extension.ExtendedPsiXmlInteraction

getInferredInteractions

Methods inherited from interface psidev.psi.mi.jami.xml.model.extension.ExtendedPsiXmlInteractionEvidence

getAliases

Methods inherited from interface psidev.psi.mi.jami.datasource.FileSourceContext

setSourceLocator, toString

Methods inherited from interface psidev.psi.mi.jami.model.Interaction

addAllParticipants, addParticipant, getAnnotations, getChecksums, getCreatedDate, getIdentifiers, getInteractionType, getParticipants, getRigid, getShortName, getUpdatedDate, getXrefs, removeAllParticipants, removeParticipant, setCreatedDate, setInteractionType, setRigid, setShortName, setUpdatedDate

Methods inherited from interface psidev.psi.mi.jami.model.NamedInteraction

getFullName, setFullName

Methods inherited from interface psidev.psi.mi.jami.xml.model.extension.PsiXmlInteraction

getEntry, getId, isIntraMolecular, setEntry, setId, setIntraMolecular

Constructor Detail

XmlInteractionEvidence

public XmlInteractionEvidence()

Constructor for XmlInteractionEvidence.

XmlInteractionEvidence

public XmlInteractionEvidence(String shortName)

Constructor for XmlInteractionEvidence.

Parameters:

shortName - a String object.

XmlInteractionEvidence

public XmlInteractionEvidence(String shortName,
                              CvTerm type)

Constructor for XmlInteractionEvidence.

Parameters:

shortName - a String object.

type - a CvTerm object.