Package psidev.psi.mi.jami.xml.model.extension.xml300

Class AbstractPsiXmlInteraction<T extends Participant>

java.lang.Object

psidev.psi.mi.jami.xml.model.extension.xml300.AbstractXmlInteraction<T>

psidev.psi.mi.jami.xml.model.extension.xml300.AbstractPsiXmlInteraction<T>

All Implemented Interfaces:

com.sun.xml.bind.Locatable, FileSourceContext, Interaction<T>, NamedInteraction<T>, ExtendedPsiXmlInteraction<T>, PsiXmlInteraction<T>

Direct Known Subclasses:

AbstractXmlBasicInteraction, AbstractXmlInteractionEvidence, AbstractXmlModelledInteraction

public abstract class AbstractPsiXmlInteraction<T extends Participant>
extends AbstractXmlInteraction<T>
implements ExtendedPsiXmlInteraction<T>

Abstract class for xml interactions implementing ExtendedPsiXmlInteraction interface

Since:

09/07/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Nested Class Summary

Nested Classes

Modifier and Type	Class	Description
static class	AbstractPsiXmlInteraction.JAXBInferredInteractionWrapper

Nested classes/interfaces inherited from class psidev.psi.mi.jami.xml.model.extension.xml300.AbstractXmlInteraction

AbstractXmlInteraction.JAXBAttributeWrapper, AbstractXmlInteraction.JAXBParticipantWrapper<T extends Participant>

Constructor Summary

Constructors

Constructor	Description
AbstractPsiXmlInteraction()	Constructor for AbstractPsiXmlInteraction.
AbstractPsiXmlInteraction(String shortName)	Constructor for AbstractPsiXmlInteraction.
AbstractPsiXmlInteraction(String shortName, CvTerm type)	Constructor for AbstractPsiXmlInteraction.

Method Summary

Modifier and Type	Method	Description
List<AbstractInferredInteraction>	getInferredInteractions()	getInferredInteractions.
CvTerm	getInteractionType()	getInteractionType.
List<CvTerm>	getInteractionTypes()	Gets the value of the interactionTypeList property.
void	setInteractionType(CvTerm term)	Sets the interaction type.
void	setJAXBInferredInteractionWrapper(AbstractPsiXmlInteraction.JAXBInferredInteractionWrapper jaxbInferredWrapper)	setJAXBInferredInteractionWrapper.

Methods inherited from class psidev.psi.mi.jami.xml.model.extension.xml300.AbstractXmlInteraction

addAllParticipants, addParticipant, assignComplexAc, assignImexId, getAliases, getAnnotations, getAttributeWrapper, getChecksums, getComplexAc, getComplexVersion, getCreatedDate, getEntry, getFullName, getId, getIdentifiers, getImexId, getInteractionNamesContainer, getInteractionXrefContainer, getParticipants, getRigid, getShortName, getSourceLocator, getUpdatedDate, getXrefs, initialiseAnnotationWrapper, initialiseNamesContainer, initialiseParticipantWrapper, isIntraMolecular, processAddedParticipant, removeAllParticipants, removeParticipant, setCreatedDate, setEntry, setFullName, setId, setInteractionNamesContainer, setInteractionXrefContainer, setIntraMolecular, setJAXBAttributeWrapper, setParticipantWrapper, setRigid, setShortName, setSourceLocator, setUpdatedDate, sourceLocation, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface psidev.psi.mi.jami.xml.model.extension.ExtendedPsiXmlInteraction

getAliases

Methods inherited from interface psidev.psi.mi.jami.datasource.FileSourceContext

getSourceLocator, setSourceLocator, toString

Methods inherited from interface psidev.psi.mi.jami.model.Interaction

addAllParticipants, addParticipant, getAnnotations, getChecksums, getCreatedDate, getIdentifiers, getParticipants, getRigid, getShortName, getUpdatedDate, getXrefs, removeAllParticipants, removeParticipant, setCreatedDate, setRigid, setShortName, setUpdatedDate

Methods inherited from interface psidev.psi.mi.jami.model.NamedInteraction

getFullName, setFullName

Methods inherited from interface psidev.psi.mi.jami.xml.model.extension.PsiXmlInteraction

getEntry, getId, isIntraMolecular, setEntry, setId, setIntraMolecular

Constructor Detail

AbstractPsiXmlInteraction

public AbstractPsiXmlInteraction()

Constructor for AbstractPsiXmlInteraction.

AbstractPsiXmlInteraction

public AbstractPsiXmlInteraction(String shortName)

Constructor for AbstractPsiXmlInteraction.

Parameters:

shortName - a String object.

AbstractPsiXmlInteraction

public AbstractPsiXmlInteraction(String shortName,
                                 CvTerm type)

Constructor for AbstractPsiXmlInteraction.

Parameters:

shortName - a String object.

type - a CvTerm object.

Method Detail

getInteractionType

public CvTerm getInteractionType()

getInteractionType.

Specified by:

getInteractionType in interface Interaction<T extends Participant>

Specified by:

getInteractionType in class AbstractXmlInteraction<T extends Participant>

Returns:

a CvTerm object.

setInteractionType

public void setInteractionType(CvTerm term)

Sets the interaction type.

Specified by:

setInteractionType in interface Interaction<T extends Participant>

Specified by:

setInteractionType in class AbstractXmlInteraction<T extends Participant>

Parameters:

term - : interaction type

getInteractionTypes

public List<CvTerm> getInteractionTypes()

Gets the value of the interactionTypeList property.

Specified by:

getInteractionTypes in interface ExtendedPsiXmlInteraction<T extends Participant>

Returns:

a List object.

getInferredInteractions

public List<AbstractInferredInteraction> getInferredInteractions()

getInferredInteractions.

Specified by:

getInferredInteractions in interface ExtendedPsiXmlInteraction<T extends Participant>

Returns:

a List object.

setJAXBInferredInteractionWrapper

public void setJAXBInferredInteractionWrapper(AbstractPsiXmlInteraction.JAXBInferredInteractionWrapper jaxbInferredWrapper)

setJAXBInferredInteractionWrapper.

Parameters:

jaxbInferredWrapper - a AbstractPsiXmlInteraction.JAXBInferredInteractionWrapper object.