Package psidev.psi.mi.jami.xml.model.extension.xml300

Class DefaultXmlModelledInteraction

java.lang.Object

psidev.psi.mi.jami.xml.model.extension.xml300.AbstractXmlInteraction<T>

psidev.psi.mi.jami.xml.model.extension.xml300.AbstractPsiXmlInteraction<ModelledParticipant>

psidev.psi.mi.jami.xml.model.extension.xml300.AbstractXmlModelledInteraction

psidev.psi.mi.jami.xml.model.extension.xml300.DefaultXmlModelledInteraction

All Implemented Interfaces:

com.sun.xml.bind.Locatable, FileSourceContext, Interaction<ModelledParticipant>, ModelledInteraction, NamedInteraction<ModelledParticipant>, ExtendedPsiXmlInteraction<ModelledParticipant>, ExtendedPsiXmlModelledInteraction, PsiXmlInteraction<ModelledParticipant>

public class DefaultXmlModelledInteraction
extends AbstractXmlModelledInteraction

Xml implementation of ModelledInteraction

Since:

08/10/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Nested Class Summary

Nested classes/interfaces inherited from class psidev.psi.mi.jami.xml.model.extension.xml300.AbstractXmlModelledInteraction

AbstractXmlModelledInteraction.JAXBConfidenceWrapper, AbstractXmlModelledInteraction.JAXBExperimentWrapper, AbstractXmlModelledInteraction.JAXBParameterWrapper, AbstractXmlModelledInteraction.JAXBParticipantWrapper

Nested classes/interfaces inherited from class psidev.psi.mi.jami.xml.model.extension.xml300.AbstractPsiXmlInteraction

AbstractPsiXmlInteraction.JAXBInferredInteractionWrapper

Nested classes/interfaces inherited from class psidev.psi.mi.jami.xml.model.extension.xml300.AbstractXmlInteraction

AbstractXmlInteraction.JAXBAttributeWrapper

Field Summary

Fields inherited from class psidev.psi.mi.jami.xml.model.extension.xml300.AbstractXmlModelledInteraction

locator

Fields inherited from interface psidev.psi.mi.jami.model.ModelledInteraction

ECO, ECO_MI

Constructor Summary

Constructors

Constructor	Description
DefaultXmlModelledInteraction()	Constructor for DefaultXmlModelledInteraction.
DefaultXmlModelledInteraction(String shortName)	Constructor for DefaultXmlModelledInteraction.
DefaultXmlModelledInteraction(String shortName, CvTerm type)	Constructor for DefaultXmlModelledInteraction.

Method Summary

Methods inherited from class psidev.psi.mi.jami.xml.model.extension.xml300.AbstractXmlModelledInteraction

getCooperativeEffects, getEvidenceType, getExperiments, getInteractionEvidences, getInteractionTypes, getModelledConfidences, getModelledParameters, getSource, getSourceLocator, initialiseCooperativeEffects, initialiseInteractionEvidences, initialiseModelledConfidenceWrapper, initialiseModelledParameterWrapper, initialiseParticipantWrapper, setEvidenceType, setInteractionNamesContainer, setInteractionXrefContainer, setJAXBAttributeWrapper, setJAXBConfidenceWrapper, setJAXBExperimentWrapper, setJAXBId, setJAXBInferredInteractionWrapper, setJAXBIntraMolecular, setJAXBParameterWrapper, setJAXBParticipantWrapper, setSource

Methods inherited from class psidev.psi.mi.jami.xml.model.extension.xml300.AbstractPsiXmlInteraction

getInferredInteractions, getInteractionType, setInteractionType

Methods inherited from class psidev.psi.mi.jami.xml.model.extension.xml300.AbstractXmlInteraction

addAllParticipants, addParticipant, assignComplexAc, assignImexId, getAliases, getAnnotations, getAttributeWrapper, getChecksums, getComplexAc, getComplexVersion, getCreatedDate, getEntry, getFullName, getId, getIdentifiers, getImexId, getInteractionNamesContainer, getInteractionXrefContainer, getParticipants, getRigid, getShortName, getUpdatedDate, getXrefs, initialiseAnnotationWrapper, initialiseNamesContainer, isIntraMolecular, processAddedParticipant, removeAllParticipants, removeParticipant, setCreatedDate, setEntry, setFullName, setId, setIntraMolecular, setParticipantWrapper, setRigid, setShortName, setSourceLocator, setUpdatedDate, sourceLocation, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface psidev.psi.mi.jami.xml.model.extension.ExtendedPsiXmlInteraction

getInferredInteractions

Methods inherited from interface psidev.psi.mi.jami.xml.model.extension.ExtendedPsiXmlModelledInteraction

getAliases

Methods inherited from interface psidev.psi.mi.jami.datasource.FileSourceContext

setSourceLocator, toString

Methods inherited from interface psidev.psi.mi.jami.model.Interaction

addAllParticipants, addParticipant, getAnnotations, getChecksums, getCreatedDate, getIdentifiers, getInteractionType, getParticipants, getRigid, getShortName, getUpdatedDate, getXrefs, removeAllParticipants, removeParticipant, setCreatedDate, setInteractionType, setRigid, setShortName, setUpdatedDate

Methods inherited from interface psidev.psi.mi.jami.model.NamedInteraction

getFullName, setFullName

Methods inherited from interface psidev.psi.mi.jami.xml.model.extension.PsiXmlInteraction

getEntry, getId, isIntraMolecular, setEntry, setId, setIntraMolecular

Constructor Detail

DefaultXmlModelledInteraction

public DefaultXmlModelledInteraction()

Constructor for DefaultXmlModelledInteraction.

DefaultXmlModelledInteraction

public DefaultXmlModelledInteraction(String shortName)

Constructor for DefaultXmlModelledInteraction.

Parameters:

shortName - a String object.

DefaultXmlModelledInteraction

public DefaultXmlModelledInteraction(String shortName,
                                     CvTerm type)

Constructor for DefaultXmlModelledInteraction.

Parameters:

shortName - a String object.

type - a CvTerm object.