Uses of Interface
psidev.psi.mi.jami.model.ParticipantPool

Packages that use ParticipantPool

Package	Description
psidev.psi.mi.jami.crosslink.extension
psidev.psi.mi.jami.enricher
psidev.psi.mi.jami.enricher.impl
psidev.psi.mi.jami.enricher.impl.full
psidev.psi.mi.jami.enricher.impl.minimal
psidev.psi.mi.jami.enricher.listener
psidev.psi.mi.jami.enricher.listener.impl
psidev.psi.mi.jami.enricher.listener.impl.log
psidev.psi.mi.jami.enricher.listener.impl.writer
psidev.psi.mi.jami.enricher.util
psidev.psi.mi.jami.listener
psidev.psi.mi.jami.listener.impl
psidev.psi.mi.jami.model
psidev.psi.mi.jami.model.impl
psidev.psi.mi.jami.utils.comparator.participant
psidev.psi.mi.jami.xml.io.writer.compact
psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts
psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts.xml25
psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts.xml30
psidev.psi.mi.jami.xml.model.extension.xml253
psidev.psi.mi.jami.xml.model.extension.xml254
psidev.psi.mi.jami.xml.model.extension.xml300

Uses of ParticipantPool in psidev.psi.mi.jami.crosslink.extension

Classes in psidev.psi.mi.jami.crosslink.extension that implement ParticipantPool

Modifier and Type	Class	Description
class	CsvExperimentalParticipantPool	Crosslink CSV extension of ParticipantEvidencePool.

Uses of ParticipantPool in psidev.psi.mi.jami.enricher

Classes in psidev.psi.mi.jami.enricher with type parameters of type ParticipantPool

Modifier and Type	Interface	Description
interface	ParticipantPoolEnricher<P extends ParticipantPool,F extends Feature>	Sub enrichers: Protein, CvTerm, Feature, Bioactive3Entity

Uses of ParticipantPool in psidev.psi.mi.jami.enricher.impl

Methods in psidev.psi.mi.jami.enricher.impl that return types with arguments of type ParticipantPool

Modifier and Type	Method	Description
ParticipantPoolEnricher<ParticipantPool,Feature>	CompositeParticipantEnricher.getPoolEnricher()	Getter for the field poolEnricher.

Method parameters in psidev.psi.mi.jami.enricher.impl with type arguments of type ParticipantPool

Modifier and Type	Method	Description
void	CompositeParticipantEnricher.setPoolEnricher(ParticipantPoolEnricher<ParticipantPool,Feature> poolEnricher)	Setter for the field poolEnricher.

Uses of ParticipantPool in psidev.psi.mi.jami.enricher.impl.full

Classes in psidev.psi.mi.jami.enricher.impl.full with type parameters of type ParticipantPool

Modifier and Type	Class	Description
class	FullParticipantPoolEnricher<P extends ParticipantPool,F extends Feature>	The participant pool enricher is an enricher which can enrich either single participant or a collection.
class	FullParticipantPoolUpdater<P extends ParticipantPool,F extends Feature>	The participant pool enricher is an enricher which can enrich either single participant or a collection.

Uses of ParticipantPool in psidev.psi.mi.jami.enricher.impl.minimal

Classes in psidev.psi.mi.jami.enricher.impl.minimal with type parameters of type ParticipantPool

Modifier and Type	Class	Description
class	MinimalParticipantPoolEnricher<P extends ParticipantPool,F extends Feature>	The participant pool enricher is an enricher which can enrich either single participant or a collection.
class	MinimalParticipantPoolUpdater<P extends ParticipantPool,F extends Feature>	The participant pool enricher is an enricher which can enrich either single participant or a collection.

Uses of ParticipantPool in psidev.psi.mi.jami.enricher.listener

Classes in psidev.psi.mi.jami.enricher.listener with type parameters of type ParticipantPool

Modifier and Type	Interface	Description
interface	ParticipantPoolEnricherListener<P extends ParticipantPool>	Participant pool enricher listener

Uses of ParticipantPool in psidev.psi.mi.jami.enricher.listener.impl

Classes in psidev.psi.mi.jami.enricher.listener.impl with type parameters of type ParticipantPool

Modifier and Type	Class	Description
class	ParticipantPoolEnricherListenerManager<P extends ParticipantPool>	A manager for listeners which holds a list of listeners.

Uses of ParticipantPool in psidev.psi.mi.jami.enricher.listener.impl.log

Classes in psidev.psi.mi.jami.enricher.listener.impl.log with type parameters of type ParticipantPool

Modifier and Type	Class	Description
class	ParticipantPoolEnricherLogger<P extends ParticipantPool>	A logging listener.

Uses of ParticipantPool in psidev.psi.mi.jami.enricher.listener.impl.writer

Classes in psidev.psi.mi.jami.enricher.listener.impl.writer with type parameters of type ParticipantPool

Modifier and Type	Class	Description
class	ParticipantPoolEnricherStatisticsWriter<P extends ParticipantPool>	A statistics logger which records changes made by the enricher.

Uses of ParticipantPool in psidev.psi.mi.jami.enricher.util

Methods in psidev.psi.mi.jami.enricher.util with parameters of type ParticipantPool

Modifier and Type	Method	Description
static <P extends ParticipantCandidate> void	EnricherUtils.mergeParticipantCandidates(ParticipantPool termToEnrich, Collection<P> toEnrichParticipants, Collection<P> fetchedParticipants, boolean remove, ParticipantPoolChangeListener poolListener, EntityEnricher participantEnricher)	mergeParticipantCandidates.

Uses of ParticipantPool in psidev.psi.mi.jami.listener

Classes in psidev.psi.mi.jami.listener with type parameters of type ParticipantPool

Modifier and Type	Interface	Description
interface	ParticipantPoolChangeListener<F extends ParticipantPool>	Listener for changes in a participant pool

Uses of ParticipantPool in psidev.psi.mi.jami.listener.impl

Classes in psidev.psi.mi.jami.listener.impl with type parameters of type ParticipantPool

Modifier and Type	Class	Description
class	ParticipantPoolChangeLogger<T extends ParticipantPool>	This listener will just interactor change events

Uses of ParticipantPool in psidev.psi.mi.jami.model

Classes in psidev.psi.mi.jami.model with type parameters of type ParticipantPool

Modifier and Type	Interface	Description
interface	ParticipantCandidate<P extends ParticipantPool,F extends Feature>	A participant candidate is part of a participant pool and contains the molecule which can interact plus some participant details such as features and causal relationships

Subinterfaces of ParticipantPool in psidev.psi.mi.jami.model

Modifier and Type	Interface	Description
interface	ExperimentalParticipantPool	A pool of experimental participants
interface	ModelledParticipantPool	A pool of modelled participant candidates

Uses of ParticipantPool in psidev.psi.mi.jami.model.impl

Classes in psidev.psi.mi.jami.model.impl with type parameters of type ParticipantPool

Modifier and Type	Class	Description
class	AbstractParticipantCandidate<P extends ParticipantPool,F extends Feature>	Abstract class for participant candidate

Classes in psidev.psi.mi.jami.model.impl that implement ParticipantPool

Modifier and Type	Class	Description
class	AbstractParticipantPool<I extends Interaction,F extends Feature,P extends ParticipantCandidate>	Abstract class for Participant pool
class	DefaultExperimentalParticipantPool	Default implementation of ExperimentalParticipantPool
class	DefaultModelledParticipantPool	Default implementation of ParticipantPool
class	DefaultParticipantPool	Default implementation of ParticipantPool

Uses of ParticipantPool in psidev.psi.mi.jami.utils.comparator.participant

Methods in psidev.psi.mi.jami.utils.comparator.participant with parameters of type ParticipantPool

Modifier and Type	Method	Description
static boolean	DefaultExactParticipantPoolComparator.areEquals(ParticipantPool participant1, ParticipantPool participant2, boolean ignoreInteractors)	Use DefaultExactParticipantPoolComparator to know if two participant pools are equals.
static boolean	DefaultParticipantPoolComparator.areEquals(ParticipantPool participant1, ParticipantPool participant2, boolean ignoreInteractors)	Use DefaultParticipantBaseComparator to know if two participant pools are equals.
static boolean	UnambiguousExactParticipantPoolComparator.areEquals(ParticipantPool participant1, ParticipantPool participant2)	Use UnambiguousExactParticipantPoolComparator to know if two participants are equals.
static boolean	UnambiguousParticipantPoolComparator.areEquals(ParticipantPool participant1, ParticipantPool participant2)	Use UnambiguousParticipantPoolComparator to know if two participants are equals.
int	ParticipantPoolComparator.compare(ParticipantPool participant1, ParticipantPool participant2)	It will first compares basic participant properties using ParticipantBaseComparator, then it will compare participant pool type using cv term comparator and then it will compare each participant candidate using EntityBaseComparator
int	UnambiguousExactParticipantPoolComparator.compare(ParticipantPool participant1, ParticipantPool participant2)	It will first compares basic participant properties using UnambiguousExactParticipantBaseComparator, then it will compare participant pool type using cv term comparator and then it will compare each participant candidate using UnambiguousExactEntityBaseComparator
int	UnambiguousParticipantPoolComparator.compare(ParticipantPool participant1, ParticipantPool participant2)	It will first compares basic participant properties using ParticipantBaseComparator, then it will compare participant pool type using cv term comparator and then it will compare each participant candidate using EntityBaseComparator

Uses of ParticipantPool in psidev.psi.mi.jami.xml.io.writer.compact

Methods in psidev.psi.mi.jami.xml.io.writer.compact with parameters of type ParticipantPool

Modifier and Type	Method	Description
protected void	AbstractCompactXmlWriter.registerParticipantPoolInteractor(ParticipantPool pool)	registerParticipantPoolInteractor.

Uses of ParticipantPool in psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts

Methods in psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts with parameters of type ParticipantPool

Modifier and Type	Method	Description
protected abstract void	AbstractXmlParticipantWriter.writeParticipantPool(ParticipantPool pool)	writeParticipantPool.

Uses of ParticipantPool in psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts.xml25

Methods in psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts.xml25 with parameters of type ParticipantPool

Modifier and Type	Method	Description
protected void	AbstractXmlModelledParticipantWriter.writeParticipantPool(ParticipantPool pool)	writeParticipantPool.
protected void	AbstractXmlParticipantEvidenceWriter.writeParticipantPool(ParticipantPool pool)	writeParticipantPool.
protected void	AbstractXmlParticipantWriter.writeParticipantPool(ParticipantPool pool)	writeParticipantPool.

Uses of ParticipantPool in psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts.xml30

Methods in psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts.xml30 with parameters of type ParticipantPool

Modifier and Type	Method	Description
protected void	AbstractXmlModelledParticipantWriter.writeParticipantPool(ParticipantPool pool)	writeParticipantPool.
protected void	AbstractXmlParticipantEvidenceWriter.writeParticipantPool(ParticipantPool pool)	writeParticipantPool.

Uses of ParticipantPool in psidev.psi.mi.jami.xml.model.extension.xml253

Classes in psidev.psi.mi.jami.xml.model.extension.xml253 that implement ParticipantPool

Modifier and Type	Class	Description
class	AbstractXmlParticipantPool<I extends Interaction,F extends Feature,P extends ParticipantCandidate>	Abstract class for XML Participant pool
class	XmlExperimentalParticipantPool	Xml implementation of participant pool
class	XmlExperimentalParticipantPoolWrapper	Wrapper for Xml participants pools Addeding new modelled feature to this participant will not add new feature evidences to the wrapped participant evidence as they are incompatibles.
class	XmlModelledParticipantPool	Xml implementation of participant pool
class	XmlParticipantPoolWrapper	Wrapper for XmlParticipant

Methods in psidev.psi.mi.jami.xml.model.extension.xml253 that return types with arguments of type ParticipantPool

Modifier and Type	Method	Description
ParticipantCandidate<ParticipantPool,Feature>	XmlParticipantCandidateWrapper.getWrappedParticipant()	getWrappedParticipant.

Constructors in psidev.psi.mi.jami.xml.model.extension.xml253 with parameters of type ParticipantPool

Constructor	Description
XmlParticipantPoolWrapper(ParticipantPool part, ModelledInteraction wrapper)	Constructor for XmlParticipantPoolWrapper.

Uses of ParticipantPool in psidev.psi.mi.jami.xml.model.extension.xml254

Classes in psidev.psi.mi.jami.xml.model.extension.xml254 that implement ParticipantPool

Modifier and Type	Class	Description
class	AbstractXmlParticipantPool<I extends Interaction,F extends Feature,P extends ParticipantCandidate>	Abstract class for XML Participant pool
class	XmlExperimentalParticipantPool	Xml implementation of participant pool
class	XmlExperimentalParticipantPoolWrapper	Wrapper for Xml participants pools Addeding new modelled feature to this participant will not add new feature evidences to the wrapped participant evidence as they are incompatibles.
class	XmlModelledParticipantPool	Xml implementation of participant pool
class	XmlParticipantPoolWrapper	Wrapper for XmlParticipant

Methods in psidev.psi.mi.jami.xml.model.extension.xml254 that return types with arguments of type ParticipantPool

Modifier and Type	Method	Description
ParticipantCandidate<ParticipantPool,Feature>	XmlParticipantCandidateWrapper.getWrappedParticipant()	getWrappedParticipant.

Constructors in psidev.psi.mi.jami.xml.model.extension.xml254 with parameters of type ParticipantPool

Constructor	Description
XmlParticipantPoolWrapper(ParticipantPool part, ModelledInteraction wrapper)	Constructor for XmlParticipantPoolWrapper.

Uses of ParticipantPool in psidev.psi.mi.jami.xml.model.extension.xml300

Classes in psidev.psi.mi.jami.xml.model.extension.xml300 that implement ParticipantPool

Modifier and Type	Class	Description
class	AbstractXmlParticipantPool<I extends Interaction,F extends Feature,P extends ParticipantCandidate>	Abstract class for XML Participant pool
class	XmlExperimentalParticipantPool	Xml implementation of participant pool
class	XmlExperimentalParticipantPoolWrapper	Wrapper for Xml participants pools Addeding new modelled feature to this participant will not add new feature evidences to the wrapped participant evidence as they are incompatibles.
class	XmlModelledParticipantPool	Xml implementation of participant pool
class	XmlParticipantPoolWrapper	Wrapper for XmlParticipant

Methods in psidev.psi.mi.jami.xml.model.extension.xml300 that return types with arguments of type ParticipantPool

Modifier and Type	Method	Description
ParticipantCandidate<ParticipantPool,Feature>	XmlParticipantCandidateWrapper.getWrappedParticipant()	getWrappedParticipant.

Constructors in psidev.psi.mi.jami.xml.model.extension.xml300 with parameters of type ParticipantPool

Constructor	Description
XmlParticipantPoolWrapper(ParticipantPool part, ModelledInteraction wrapper)	Constructor for XmlParticipantPoolWrapper.