Uses of Interface
psidev.psi.mi.jami.model.VariableParameter

Packages that use VariableParameter

Package	Description
psidev.psi.mi.jami.enricher.listener.impl
psidev.psi.mi.jami.enricher.listener.impl.writer
psidev.psi.mi.jami.listener
psidev.psi.mi.jami.listener.impl
psidev.psi.mi.jami.model
psidev.psi.mi.jami.model.impl
psidev.psi.mi.jami.utils.clone
psidev.psi.mi.jami.utils.comparator.experiment
psidev.psi.mi.jami.xml.io.writer.elements
psidev.psi.mi.jami.xml.io.writer.elements.impl.xml30
psidev.psi.mi.jami.xml.model.extension
psidev.psi.mi.jami.xml.model.extension.xml253
psidev.psi.mi.jami.xml.model.extension.xml254
psidev.psi.mi.jami.xml.model.extension.xml300
psidev.psi.mi.jami.xml.model.reference.xml253
psidev.psi.mi.jami.xml.model.reference.xml254
psidev.psi.mi.jami.xml.model.reference.xml300

Uses of VariableParameter in psidev.psi.mi.jami.enricher.listener.impl

Methods in psidev.psi.mi.jami.enricher.listener.impl with parameters of type VariableParameter

Modifier and Type	Method	Description
void	ExperimentEnricherListenerManager.onAddedVariableParameter(Experiment experiment, VariableParameter added)	Listen to the event where a parameter has been added to the object parameters.
void	ExperimentEnricherListenerManager.onRemovedVariableParameter(Experiment o, VariableParameter removed)	Listen to the event where a parameter has been removed from the object parameters.

Uses of VariableParameter in psidev.psi.mi.jami.enricher.listener.impl.writer

Methods in psidev.psi.mi.jami.enricher.listener.impl.writer with parameters of type VariableParameter

Modifier and Type	Method	Description
void	ExperimentEnricherStatisticsWriter.onAddedVariableParameter(Experiment o, VariableParameter added)	Listen to the event where a parameter has been added to the object parameters.
void	ExperimentEnricherStatisticsWriter.onRemovedVariableParameter(Experiment o, VariableParameter removed)	Listen to the event where a parameter has been removed from the object parameters.

Uses of VariableParameter in psidev.psi.mi.jami.listener

Methods in psidev.psi.mi.jami.listener with parameters of type VariableParameter

Modifier and Type	Method	Description
void	ExperimentChangeListener.onAddedVariableParameter(Experiment o, VariableParameter added)	Listen to the event where a parameter has been added to the object parameters.
void	ExperimentChangeListener.onRemovedVariableParameter(Experiment o, VariableParameter removed)	Listen to the event where a parameter has been removed from the object parameters.

Uses of VariableParameter in psidev.psi.mi.jami.listener.impl

Methods in psidev.psi.mi.jami.listener.impl with parameters of type VariableParameter

Modifier and Type	Method	Description
void	ExperimentChangeLogger.onAddedVariableParameter(Experiment experiment, VariableParameter addedParameter)	Listen to the event where a parameter has been added to the object parameters.
void	ExperimentChangeLogger.onRemovedVariableParameter(Experiment experiment, VariableParameter removedParameter)	Listen to the event where a parameter has been removed from the object parameters.

Uses of VariableParameter in psidev.psi.mi.jami.model

Methods in psidev.psi.mi.jami.model with type parameters of type VariableParameter

Modifier and Type	Method	Description
<V extends VariableParameter> Collection<V>	Experiment.getVariableParameters()	The collection of variableParameters and their values used in this experiment.

Methods in psidev.psi.mi.jami.model that return VariableParameter

Modifier and Type	Method	Description
VariableParameter	VariableParameterValue.getVariableParameter()	The variableParameter reporting this VariableParameterValueComparator.

Methods in psidev.psi.mi.jami.model with parameters of type VariableParameter

Modifier and Type	Method	Description
boolean	Experiment.addVariableParameter(VariableParameter variableParameter)	This method will add the variableParameter and set the experiment of the new variableParameter to this current experiment
boolean	Experiment.removeVariableParameter(VariableParameter variableParameter)	This method will remove the variableParameter and set the experiment of the removed variableParameter to null.

Method parameters in psidev.psi.mi.jami.model with type arguments of type VariableParameter

Modifier and Type	Method	Description
boolean	Experiment.addAllVariableParameters(Collection<? extends VariableParameter> variableParameters)	This method will add all variableParameters and set the experiment of the new variableParameters to this current experiment
boolean	Experiment.removeAllVariableParameters(Collection<? extends VariableParameter> variableParameters)	This method will remove all the variableParameters and set the experiment of the removed variableParameters to null.

Uses of VariableParameter in psidev.psi.mi.jami.model.impl

Classes in psidev.psi.mi.jami.model.impl that implement VariableParameter

Modifier and Type	Class	Description
class	DefaultVariableParameter	Default implementation for variableParameters Notes: The equals and hashcode methods have been overridden to be consistent with UnambiguousVariableParameterComparator

Methods in psidev.psi.mi.jami.model.impl that return VariableParameter

Modifier and Type	Method	Description
VariableParameter	DefaultVariableParameterValue.getVariableParameter()	Getter for the field variableParameter.

Methods in psidev.psi.mi.jami.model.impl that return types with arguments of type VariableParameter

Modifier and Type	Method	Description
Collection<VariableParameter>	DefaultExperiment.getVariableParameters()	Getter for the field variableParameters.

Methods in psidev.psi.mi.jami.model.impl with parameters of type VariableParameter

Modifier and Type	Method	Description
boolean	DefaultExperiment.addVariableParameter(VariableParameter variableParameter)	This method will add the variableParameter and set the experiment of the new variableParameter to this current experiment
boolean	DefaultExperiment.removeVariableParameter(VariableParameter variableParameter)	This method will remove the variableParameter and set the experiment of the removed variableParameter to null.

Method parameters in psidev.psi.mi.jami.model.impl with type arguments of type VariableParameter

Modifier and Type	Method	Description
boolean	DefaultExperiment.addAllVariableParameters(Collection<? extends VariableParameter> variableParameters)	This method will add all variableParameters and set the experiment of the new variableParameters to this current experiment
protected void	DefaultExperiment.initialiseVariableParametersWith(Collection<VariableParameter> variableParameters)	initialiseVariableParametersWith
boolean	DefaultExperiment.removeAllVariableParameters(Collection<? extends VariableParameter> variableParameters)	This method will remove all the variableParameters and set the experiment of the removed variableParameters to null.

Constructors in psidev.psi.mi.jami.model.impl with parameters of type VariableParameter

Constructor	Description
DefaultVariableParameterValue(String value, VariableParameter variableParameter)	Constructor for DefaultVariableParameterValue.
DefaultVariableParameterValue(String value, VariableParameter variableParameter, Integer order)	Constructor for DefaultVariableParameterValue.

Uses of VariableParameter in psidev.psi.mi.jami.utils.clone

Methods in psidev.psi.mi.jami.utils.clone with parameters of type VariableParameter

Modifier and Type	Method	Description
static void	VariableParameterCloner.copyAndOverrideVariableParameterProperties(VariableParameter source, VariableParameter target)	This method will copy properties of parameter source in parameter target (excepted experiment) and will override all the other properties of Target parameter.

Uses of VariableParameter in psidev.psi.mi.jami.utils.comparator.experiment

Methods in psidev.psi.mi.jami.utils.comparator.experiment that return types with arguments of type VariableParameter

Modifier and Type	Method	Description
CollectionComparator<VariableParameter>	ExperimentComparator.getVariableParameterCollectionComparator()	Getter for the field variableParameterCollectionComparator.

Methods in psidev.psi.mi.jami.utils.comparator.experiment with parameters of type VariableParameter

Modifier and Type	Method	Description
static boolean	DefaultVariableParameterComparator.areEquals(VariableParameter variableParameter1, VariableParameter variableParameter2)	Use DefaultVariableParameterComparator to know if two variableParameter are equals.
static boolean	UnambiguousVariableParameterComparator.areEquals(VariableParameter param1, VariableParameter param2)	Use UnambiguousVariableParameterComparator to know if two variableParameter are equals.
int	UnambiguousVariableParameterComparator.compare(VariableParameter param1, VariableParameter param2)	It will first compare the description (case insensitive).
int	VariableParameterComparator.compare(VariableParameter variableParameter1, VariableParameter variableParameter2)	It will first compare the description (case insensitive).
static int	UnambiguousVariableParameterComparator.hashCode(VariableParameter param)	hashCode

Constructor parameters in psidev.psi.mi.jami.utils.comparator.experiment with type arguments of type VariableParameter

Constructor	Description
ExperimentComparator(Comparator<Publication> publicationComparator, OrganismComparator organismComparator, CollectionComparator<VariableParameter> variableParameter)	Constructor for ExperimentComparator.

Uses of VariableParameter in psidev.psi.mi.jami.xml.io.writer.elements

Methods in psidev.psi.mi.jami.xml.io.writer.elements that return types with arguments of type VariableParameter

Modifier and Type	Method	Description
static PsiXmlElementWriter<VariableParameter>	PsiXmlElementWriterFactory.createVariableParameterWriter(XMLStreamWriter streamWriter, boolean extended, PsiXmlObjectCache objectIndex, PsiXmlVariableNameWriter<CvTerm> cvWriter)	createVariableParameterWriter.

Uses of VariableParameter in psidev.psi.mi.jami.xml.io.writer.elements.impl.xml30

Methods in psidev.psi.mi.jami.xml.io.writer.elements.impl.xml30 that return types with arguments of type VariableParameter

Modifier and Type	Method	Description
PsiXmlElementWriter<VariableParameter>	XmlExperimentWriter.getVariableParameterWriter()	Getter for the field variableParameterWriter.

Methods in psidev.psi.mi.jami.xml.io.writer.elements.impl.xml30 with parameters of type VariableParameter

Modifier and Type	Method	Description
void	XmlVariableParameterWriter.write(VariableParameter object)	write.
protected void	XmlVariableParameterWriter.writeDescription(VariableParameter object)	writeDescription.
protected void	XmlVariableParameterWriter.writeUnit(VariableParameter object)	writeUnit.
protected void	XmlVariableParameterWriter.writeVariableParameterValues(VariableParameter object)	writeVariableParameterValues.

Method parameters in psidev.psi.mi.jami.xml.io.writer.elements.impl.xml30 with type arguments of type VariableParameter

Modifier and Type	Method	Description
void	XmlExperimentWriter.setVariableParameterWriter(PsiXmlElementWriter<VariableParameter> variableParameterWriter)	Setter for the field variableParameterWriter.

Uses of VariableParameter in psidev.psi.mi.jami.xml.model.extension

Methods in psidev.psi.mi.jami.xml.model.extension that return VariableParameter

Modifier and Type	Method	Description
VariableParameter	AbstractXmlVariableParameterValue.getVariableParameter()	Getter for the field variableParameter.

Methods in psidev.psi.mi.jami.xml.model.extension with parameters of type VariableParameter

Modifier and Type	Method	Description
void	AbstractXmlVariableParameterValue.setVariableParameter(VariableParameter variableParameter)	Setter for the field variableParameter.

Constructors in psidev.psi.mi.jami.xml.model.extension with parameters of type VariableParameter

Constructor	Description
AbstractXmlVariableParameterValue(String value, VariableParameter variableParameter)	Constructor for AbstractXmlVariableParameterValue.
AbstractXmlVariableParameterValue(String value, VariableParameter variableParameter, Integer order)	Constructor for AbstractXmlVariableParameterValue.

Uses of VariableParameter in psidev.psi.mi.jami.xml.model.extension.xml253

Classes in psidev.psi.mi.jami.xml.model.extension.xml253 that implement VariableParameter

Modifier and Type	Class	Description
class	XmlVariableParameter	XML 2.5 implementation of variable parameter

Methods in psidev.psi.mi.jami.xml.model.extension.xml253 that return types with arguments of type VariableParameter

Modifier and Type	Method	Description
List<VariableParameter>	AbstractXmlExperiment.JAXBVariableParameterWrapper.getJAXBVariableParameters()
Collection<VariableParameter>	AbstractXmlExperiment.getVariableParameters()	Getter for the field variableParameters.

Methods in psidev.psi.mi.jami.xml.model.extension.xml253 with parameters of type VariableParameter

Modifier and Type	Method	Description
boolean	AbstractXmlExperiment.addVariableParameter(VariableParameter variableParameter)	This method will add the variableParameter and set the experiment of the new variableParameter to this current experiment
boolean	AbstractXmlExperiment.removeVariableParameter(VariableParameter variableParameter)	This method will remove the variableParameter and set the experiment of the removed variableParameter to null.

Method parameters in psidev.psi.mi.jami.xml.model.extension.xml253 with type arguments of type VariableParameter

Modifier and Type	Method	Description
boolean	AbstractXmlExperiment.addAllVariableParameters(Collection<? extends VariableParameter> variableParameters)	This method will add all variableParameters and set the experiment of the new variableParameters to this current experiment
boolean	AbstractXmlExperiment.removeAllVariableParameters(Collection<? extends VariableParameter> variableParameters)	This method will remove all the variableParameters and set the experiment of the removed variableParameters to null.

Constructors in psidev.psi.mi.jami.xml.model.extension.xml253 with parameters of type VariableParameter

Constructor	Description
XmlVariableParameterValue(String value, VariableParameter variableParameter)	Constructor for XmlVariableParameterValue.
XmlVariableParameterValue(String value, VariableParameter variableParameter, Integer order)	Constructor for XmlVariableParameterValue.

Constructor parameters in psidev.psi.mi.jami.xml.model.extension.xml253 with type arguments of type VariableParameter

Constructor	Description
JAXBVariableParameterWrapper(List<VariableParameter> parameters)

Uses of VariableParameter in psidev.psi.mi.jami.xml.model.extension.xml254

Classes in psidev.psi.mi.jami.xml.model.extension.xml254 that implement VariableParameter

Modifier and Type	Class	Description
class	XmlVariableParameter	XML 2.5 implementation of variable parameter

Methods in psidev.psi.mi.jami.xml.model.extension.xml254 that return types with arguments of type VariableParameter

Modifier and Type	Method	Description
List<VariableParameter>	AbstractXmlExperiment.JAXBVariableParameterWrapper.getJAXBVariableParameters()
Collection<VariableParameter>	AbstractXmlExperiment.getVariableParameters()	Getter for the field variableParameters.

Methods in psidev.psi.mi.jami.xml.model.extension.xml254 with parameters of type VariableParameter

Modifier and Type	Method	Description
boolean	AbstractXmlExperiment.addVariableParameter(VariableParameter variableParameter)	This method will add the variableParameter and set the experiment of the new variableParameter to this current experiment
boolean	AbstractXmlExperiment.removeVariableParameter(VariableParameter variableParameter)	This method will remove the variableParameter and set the experiment of the removed variableParameter to null.

Method parameters in psidev.psi.mi.jami.xml.model.extension.xml254 with type arguments of type VariableParameter

Modifier and Type	Method	Description
boolean	AbstractXmlExperiment.addAllVariableParameters(Collection<? extends VariableParameter> variableParameters)	This method will add all variableParameters and set the experiment of the new variableParameters to this current experiment
boolean	AbstractXmlExperiment.removeAllVariableParameters(Collection<? extends VariableParameter> variableParameters)	This method will remove all the variableParameters and set the experiment of the removed variableParameters to null.

Constructors in psidev.psi.mi.jami.xml.model.extension.xml254 with parameters of type VariableParameter

Constructor	Description
XmlVariableParameterValue(String value, VariableParameter variableParameter)	Constructor for XmlVariableParameterValue.
XmlVariableParameterValue(String value, VariableParameter variableParameter, Integer order)	Constructor for XmlVariableParameterValue.

Constructor parameters in psidev.psi.mi.jami.xml.model.extension.xml254 with type arguments of type VariableParameter

Constructor	Description
JAXBVariableParameterWrapper(List<VariableParameter> parameters)

Uses of VariableParameter in psidev.psi.mi.jami.xml.model.extension.xml300

Classes in psidev.psi.mi.jami.xml.model.extension.xml300 that implement VariableParameter

Modifier and Type	Class	Description
class	XmlVariableParameter	XML 3.0 implementation of variable parameter

Methods in psidev.psi.mi.jami.xml.model.extension.xml300 that return types with arguments of type VariableParameter

Modifier and Type	Method	Description
List<VariableParameter>	AbstractXmlExperiment.JAXBVariableParameterWrapper.getJAXBVariableParameters()
Collection<VariableParameter>	AbstractXmlExperiment.getVariableParameters()	Getter for the field variableParameters.

Methods in psidev.psi.mi.jami.xml.model.extension.xml300 with parameters of type VariableParameter

Modifier and Type	Method	Description
boolean	AbstractXmlExperiment.addVariableParameter(VariableParameter variableParameter)	This method will add the variableParameter and set the experiment of the new variableParameter to this current experiment
boolean	AbstractXmlExperiment.removeVariableParameter(VariableParameter variableParameter)	This method will remove the variableParameter and set the experiment of the removed variableParameter to null.

Method parameters in psidev.psi.mi.jami.xml.model.extension.xml300 with type arguments of type VariableParameter

Modifier and Type	Method	Description
boolean	AbstractXmlExperiment.addAllVariableParameters(Collection<? extends VariableParameter> variableParameters)	This method will add all variableParameters and set the experiment of the new variableParameters to this current experiment
boolean	AbstractXmlExperiment.removeAllVariableParameters(Collection<? extends VariableParameter> variableParameters)	This method will remove all the variableParameters and set the experiment of the removed variableParameters to null.

Constructors in psidev.psi.mi.jami.xml.model.extension.xml300 with parameters of type VariableParameter

Constructor	Description
XmlVariableParameterValue(String value, VariableParameter variableParameter)	Constructor for XmlVariableParameterValue.
XmlVariableParameterValue(String value, VariableParameter variableParameter, Integer order)	Constructor for XmlVariableParameterValue.

Constructor parameters in psidev.psi.mi.jami.xml.model.extension.xml300 with type arguments of type VariableParameter

Constructor	Description
JAXBVariableParameterWrapper(List<VariableParameter> parameters)

Uses of VariableParameter in psidev.psi.mi.jami.xml.model.reference.xml253

Methods in psidev.psi.mi.jami.xml.model.reference.xml253 that return types with arguments of type VariableParameter

Modifier and Type	Method	Description
Collection<VariableParameter>	AbstractExperimentRef.getVariableParameters()	getVariableParameters.

Methods in psidev.psi.mi.jami.xml.model.reference.xml253 with parameters of type VariableParameter

Modifier and Type	Method	Description
boolean	AbstractExperimentRef.addVariableParameter(VariableParameter variableParameter)	This method will add the variableParameter and set the experiment of the new variableParameter to this current experiment
boolean	AbstractExperimentRef.removeVariableParameter(VariableParameter variableParameter)	This method will remove the variableParameter and set the experiment of the removed variableParameter to null.

Method parameters in psidev.psi.mi.jami.xml.model.reference.xml253 with type arguments of type VariableParameter

Modifier and Type	Method	Description
boolean	AbstractExperimentRef.addAllVariableParameters(Collection<? extends VariableParameter> variableParameters)	This method will add all variableParameters and set the experiment of the new variableParameters to this current experiment
boolean	AbstractExperimentRef.removeAllVariableParameters(Collection<? extends VariableParameter> variableParameters)	This method will remove all the variableParameters and set the experiment of the removed variableParameters to null.

Uses of VariableParameter in psidev.psi.mi.jami.xml.model.reference.xml254

Methods in psidev.psi.mi.jami.xml.model.reference.xml254 that return types with arguments of type VariableParameter

Modifier and Type	Method	Description
Collection<VariableParameter>	AbstractExperimentRef.getVariableParameters()	getVariableParameters.

Methods in psidev.psi.mi.jami.xml.model.reference.xml254 with parameters of type VariableParameter

Modifier and Type	Method	Description
boolean	AbstractExperimentRef.addVariableParameter(VariableParameter variableParameter)	This method will add the variableParameter and set the experiment of the new variableParameter to this current experiment
boolean	AbstractExperimentRef.removeVariableParameter(VariableParameter variableParameter)	This method will remove the variableParameter and set the experiment of the removed variableParameter to null.

Method parameters in psidev.psi.mi.jami.xml.model.reference.xml254 with type arguments of type VariableParameter

Modifier and Type	Method	Description
boolean	AbstractExperimentRef.addAllVariableParameters(Collection<? extends VariableParameter> variableParameters)	This method will add all variableParameters and set the experiment of the new variableParameters to this current experiment
boolean	AbstractExperimentRef.removeAllVariableParameters(Collection<? extends VariableParameter> variableParameters)	This method will remove all the variableParameters and set the experiment of the removed variableParameters to null.

Uses of VariableParameter in psidev.psi.mi.jami.xml.model.reference.xml300

Methods in psidev.psi.mi.jami.xml.model.reference.xml300 that return types with arguments of type VariableParameter

Modifier and Type	Method	Description
Collection<VariableParameter>	AbstractExperimentRef.getVariableParameters()	getVariableParameters.

Methods in psidev.psi.mi.jami.xml.model.reference.xml300 with parameters of type VariableParameter

Modifier and Type	Method	Description
boolean	AbstractExperimentRef.addVariableParameter(VariableParameter variableParameter)	This method will add the variableParameter and set the experiment of the new variableParameter to this current experiment
boolean	AbstractExperimentRef.removeVariableParameter(VariableParameter variableParameter)	This method will remove the variableParameter and set the experiment of the removed variableParameter to null.

Method parameters in psidev.psi.mi.jami.xml.model.reference.xml300 with type arguments of type VariableParameter

Modifier and Type	Method	Description
boolean	AbstractExperimentRef.addAllVariableParameters(Collection<? extends VariableParameter> variableParameters)	This method will add all variableParameters and set the experiment of the new variableParameters to this current experiment
boolean	AbstractExperimentRef.removeAllVariableParameters(Collection<? extends VariableParameter> variableParameters)	This method will remove all the variableParameters and set the experiment of the removed variableParameters to null.