Uses of Interface
psidev.psi.mi.jami.model.Allostery

Packages that use Allostery

Package	Description
psidev.psi.mi.jami.model.impl
psidev.psi.mi.jami.utils.clone
psidev.psi.mi.jami.utils.comparator.cooperativity
psidev.psi.mi.jami.xml.io.writer.elements
psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts.xml30
psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.xml30
psidev.psi.mi.jami.xml.io.writer.elements.impl.xml30
psidev.psi.mi.jami.xml.model.extension.xml253
psidev.psi.mi.jami.xml.model.extension.xml254
psidev.psi.mi.jami.xml.model.extension.xml300

Uses of Allostery in psidev.psi.mi.jami.model.impl

Classes in psidev.psi.mi.jami.model.impl that implement Allostery

Modifier and Type	Class	Description
class	DefaultAllostery<T extends AllostericEffector>	Default implementation for Allostery Notes: The equals and hashcode methods have NOT been overridden because the Allostery object is a complex object.

Uses of Allostery in psidev.psi.mi.jami.utils.clone

Methods in psidev.psi.mi.jami.utils.clone with parameters of type Allostery

Modifier and Type	Method	Description
static <T extends AllostericEffector> void	CooperativeEffectCloner.copyAndOverrideAllosteryProperties(Allostery<T> source, Allostery<T> target)	This method will copy basic properties and allostery specific properties from allostery source to allostery target.

Uses of Allostery in psidev.psi.mi.jami.utils.comparator.cooperativity

Methods in psidev.psi.mi.jami.utils.comparator.cooperativity with parameters of type Allostery

Modifier and Type	Method	Description
static boolean	DefaultAllosteryComparator.areEquals(Allostery allostery1, Allostery allostery2)	Use DefaultAllosteryComparator to know if two allostery are equals.
static boolean	DefaultExactAllosteryComparator.areEquals(Allostery allostery1, Allostery allostery2)	Use DefaultExactAllosteryComparator to know if two allostery are equals.
static boolean	UnambiguousAllosteryComparator.areEquals(Allostery effect1, Allostery effect2)	Use UnambiguousAllosteryComparator to know if two allostery are equals.
static boolean	UnambiguousExactAllosteryComparator.areEquals(Allostery effect1, Allostery effect2)	Use UnambiguousExactAllosteryComparator to know if two allostery are equals.
int	AllosteryComparator.compare(Allostery allostery1, Allostery allostery2)	It will first compare basic cooperative effect properties using CooperativeEffectBaseComparator.
int	UnambiguousAllosteryComparator.compare(Allostery effect1, Allostery effect2)	It will first compare basic cooperative effect properties using CooperativeEffectBaseComparator.
int	UnambiguousExactAllosteryComparator.compare(Allostery effect1, Allostery effect2)	It will first compare basic cooperative effect properties using CooperativeEffectBaseComparator.

Uses of Allostery in psidev.psi.mi.jami.xml.io.writer.elements

Methods in psidev.psi.mi.jami.xml.io.writer.elements that return types with arguments of type Allostery

Modifier and Type	Method	Description
static PsiXmlElementWriter<Allostery>	PsiXmlElementWriterFactory.createAllosteryWriter(XMLStreamWriter streamWriter, boolean expanded, PsiXmlObjectCache objectIndex, PsiXmlVariableNameWriter<CvTerm> cvWriter, PsiXmlElementWriter<Annotation> attributeWriter, PsiXmlPublicationWriter publicationWriter)	createAllosteryWriter.

Uses of Allostery in psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts.xml30

Methods in psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts.xml30 that return types with arguments of type Allostery

Modifier and Type	Method	Description
PsiXmlElementWriter<Allostery>	AbstractXmlModelledInteractionWriter.getAllosteryWriter()	Getter for the field allosteryWriter.

Method parameters in psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts.xml30 with type arguments of type Allostery

Modifier and Type	Method	Description
void	AbstractXmlModelledInteractionWriter.setAllosteryWriter(PsiXmlElementWriter<Allostery> allosteryWriter)	Setter for the field allosteryWriter.

Uses of Allostery in psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.xml30

Methods in psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.xml30 that return types with arguments of type Allostery

Modifier and Type	Method	Description
PsiXmlElementWriter<Allostery>	AbstractXmlModelledInteractionWriter.getAllosteryWriter()	Getter for the field allosteryWriter.

Method parameters in psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.xml30 with type arguments of type Allostery

Modifier and Type	Method	Description
void	AbstractXmlModelledInteractionWriter.setAllosteryWriter(PsiXmlElementWriter<Allostery> allosteryWriter)	Setter for the field allosteryWriter.

Uses of Allostery in psidev.psi.mi.jami.xml.io.writer.elements.impl.xml30

Methods in psidev.psi.mi.jami.xml.io.writer.elements.impl.xml30 with parameters of type Allostery

Modifier and Type	Method	Description
protected void	XmlAllosteryWriter.writeAllostericEffector(Allostery object)	writeAllostericEffector.
protected void	XmlAllosteryWriter.writeAllostericMechanism(Allostery object)	writeAllostericMechanism.
protected void	XmlAllosteryWriter.writeAllostericMolecule(Allostery object)	writeAllostericMolecule.
protected void	XmlAllosteryWriter.writeAllosteryType(Allostery object)	writeAllosteryType.
protected void	XmlAllosteryWriter.writeOtherProperties(Allostery object)	writeOtherProperties.

Uses of Allostery in psidev.psi.mi.jami.xml.model.extension.xml253

Classes in psidev.psi.mi.jami.xml.model.extension.xml253 that implement Allostery

Modifier and Type	Class	Description
class	XmlAllostery<T extends AllostericEffector>	XML implementation of Allostery

Uses of Allostery in psidev.psi.mi.jami.xml.model.extension.xml254

Classes in psidev.psi.mi.jami.xml.model.extension.xml254 that implement Allostery

Modifier and Type	Class	Description
class	XmlAllostery<T extends AllostericEffector>	XML implementation of Allostery

Uses of Allostery in psidev.psi.mi.jami.xml.model.extension.xml300

Classes in psidev.psi.mi.jami.xml.model.extension.xml300 that implement Allostery

Modifier and Type	Class	Description
class	XmlAllostery	XML 3.0 implementation of Allostery