Uses of Interface
psidev.psi.mi.jami.model.Checksum

Packages that use Checksum

Package	Description
psidev.psi.mi.jami.binary.impl
psidev.psi.mi.jami.enricher.impl.full
psidev.psi.mi.jami.enricher.impl.minimal
psidev.psi.mi.jami.enricher.listener.impl
psidev.psi.mi.jami.enricher.listener.impl.writer
psidev.psi.mi.jami.enricher.util
psidev.psi.mi.jami.listener
psidev.psi.mi.jami.listener.impl
psidev.psi.mi.jami.model
psidev.psi.mi.jami.model.impl
psidev.psi.mi.jami.tab.extension
psidev.psi.mi.jami.tab.io.writer.feeder
psidev.psi.mi.jami.utils
psidev.psi.mi.jami.utils.comparator.checksum
psidev.psi.mi.jami.xml.io.writer.elements
psidev.psi.mi.jami.xml.io.writer.elements.impl
psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts
psidev.psi.mi.jami.xml.model.extension
psidev.psi.mi.jami.xml.model.extension.binary
psidev.psi.mi.jami.xml.model.extension.binary.xml30
psidev.psi.mi.jami.xml.model.extension.xml253
psidev.psi.mi.jami.xml.model.extension.xml254
psidev.psi.mi.jami.xml.model.extension.xml300
psidev.psi.mi.jami.xml.model.reference.xml253
psidev.psi.mi.jami.xml.model.reference.xml254
psidev.psi.mi.jami.xml.model.reference.xml300

Uses of Checksum in psidev.psi.mi.jami.binary.impl

Methods in psidev.psi.mi.jami.binary.impl that return types with arguments of type Checksum

Modifier and Type	Method	Description
Collection<Checksum>	AbstractBinaryInteractionWrapper.getChecksums()	getChecksums

Uses of Checksum in psidev.psi.mi.jami.enricher.impl.full

Methods in psidev.psi.mi.jami.enricher.impl.full with parameters of type Checksum

Modifier and Type	Method	Description
void	FullFeatureEvidenceEnricher.onAddedChecksum(Protein interactor, Checksum added)	Listen to the event where a checksum has been added to the interactor checksums.
void	FullFeatureEvidenceUpdater.onAddedChecksum(Protein interactor, Checksum added)	Listen to the event where a checksum has been added to the interactor checksums.
void	FullFeatureUpdater.onAddedChecksum(Protein interactor, Checksum added)	Listen to the event where a checksum has been added to the interactor checksums.
void	FullFeatureEvidenceEnricher.onRemovedChecksum(Protein interactor, Checksum removed)	Listen to the event where a checksum has been removed from the interactor checksums.
void	FullFeatureEvidenceUpdater.onRemovedChecksum(Protein interactor, Checksum removed)	Listen to the event where a checksum has been removed from the interactor checksums.
void	FullFeatureUpdater.onRemovedChecksum(Protein interactor, Checksum removed)	Listen to the event where a checksum has been removed from the interactor checksums.

Uses of Checksum in psidev.psi.mi.jami.enricher.impl.minimal

Methods in psidev.psi.mi.jami.enricher.impl.minimal with parameters of type Checksum

Modifier and Type	Method	Description
void	MinimalFeatureEnricher.onAddedChecksum(Protein interactor, Checksum added)	Listen to the event where a checksum has been added to the interactor checksums.
void	MinimalFeatureEvidenceUpdater.onAddedChecksum(Protein interactor, Checksum added)	Listen to the event where a checksum has been added to the interactor checksums.
void	MinimalFeatureEnricher.onRemovedChecksum(Protein interactor, Checksum removed)	Listen to the event where a checksum has been removed from the interactor checksums.
void	MinimalFeatureEvidenceUpdater.onRemovedChecksum(Protein interactor, Checksum removed)	Listen to the event where a checksum has been removed from the interactor checksums.

Uses of Checksum in psidev.psi.mi.jami.enricher.listener.impl

Methods in psidev.psi.mi.jami.enricher.listener.impl with parameters of type Checksum

Modifier and Type	Method	Description
void	InteractionEnricherListenerManager.onAddedChecksum(I interactor, Checksum added)	Listen to the event where a checksum has been added to the interactor checksums.
void	InteractorEnricherListenerManager.onAddedChecksum(T interactor, Checksum added)	Listen to the event where a checksum has been added to the interactor checksums.
void	InteractionEnricherListenerManager.onRemovedChecksum(I interactor, Checksum removed)	Listen to the event where a checksum has been removed from the interactor checksums.
void	InteractorEnricherListenerManager.onRemovedChecksum(T interactor, Checksum removed)	Listen to the event where a checksum has been removed from the interactor checksums.

Uses of Checksum in psidev.psi.mi.jami.enricher.listener.impl.writer

Methods in psidev.psi.mi.jami.enricher.listener.impl.writer with parameters of type Checksum

Modifier and Type	Method	Description
void	InteractionEnricherStatisticsWriter.onAddedChecksum(I interactor, Checksum added)	Listen to the event where a checksum has been added to the interactor checksums.
void	InteractorEnricherStatisticsWriter.onAddedChecksum(T interactor, Checksum added)	Listen to the event where a checksum has been added to the interactor checksums.
void	InteractionEnricherStatisticsWriter.onRemovedChecksum(I interactor, Checksum removed)	Listen to the event where a checksum has been removed from the interactor checksums.
void	InteractorEnricherStatisticsWriter.onRemovedChecksum(T interactor, Checksum removed)	Listen to the event where a checksum has been removed from the interactor checksums.

Uses of Checksum in psidev.psi.mi.jami.enricher.util

Method parameters in psidev.psi.mi.jami.enricher.util with type arguments of type Checksum

Modifier and Type	Method	Description
static <T> void	EnricherUtils.mergeChecksums(T termToEnrich, Collection<Checksum> toEnrichChecksums, Collection<Checksum> fetchedCehcksum, boolean remove, ChecksumsChangeListener<T> aliasListener)	mergeChecksums.

Uses of Checksum in psidev.psi.mi.jami.listener

Methods in psidev.psi.mi.jami.listener with parameters of type Checksum

Modifier and Type	Method	Description
void	ChecksumsChangeListener.onAddedChecksum(T interactor, Checksum added)	Listen to the event where a checksum has been added to the interactor checksums.
void	ChecksumsChangeListener.onRemovedChecksum(T interactor, Checksum removed)	Listen to the event where a checksum has been removed from the interactor checksums.

Uses of Checksum in psidev.psi.mi.jami.listener.impl

Methods in psidev.psi.mi.jami.listener.impl with parameters of type Checksum

Modifier and Type	Method	Description
void	InteractionChangeLogger.onAddedChecksum(T interaction, Checksum added)	Listen to the event where a checksum has been added to the interactor checksums.
void	InteractorChangeLogger.onAddedChecksum(T protein, Checksum added)	Listen to the event where a checksum has been added to the interactor checksums.
void	InteractionChangeLogger.onRemovedChecksum(T interaction, Checksum removed)	Listen to the event where a checksum has been removed from the interactor checksums.
void	InteractorChangeLogger.onRemovedChecksum(T protein, Checksum removed)	Listen to the event where a checksum has been removed from the interactor checksums.

Uses of Checksum in psidev.psi.mi.jami.model

Methods in psidev.psi.mi.jami.model with type parameters of type Checksum

Modifier and Type	Method	Description
<C extends Checksum> Collection<C>	Interaction.getChecksums()	Set of checksums computed for this interaction..
<C extends Checksum> Collection<C>	Interactor.getChecksums()	Set of checksums computed for this interactor.

Uses of Checksum in psidev.psi.mi.jami.model.impl

Classes in psidev.psi.mi.jami.model.impl that implement Checksum

Modifier and Type	Class	Description
class	DefaultChecksum	Default implementation for Checksum Notes: The equals and hashcode methods have been overridden to be consistent with UnambiguousChecksumComparator

Methods in psidev.psi.mi.jami.model.impl that return types with arguments of type Checksum

Modifier and Type	Method	Description
Collection<Checksum>	AbstractInteraction.getChecksums()	Getter for the field checksums.
Collection<Checksum>	DefaultComplex.getChecksums()	getChecksums
Collection<Checksum>	DefaultInteractor.getChecksums()	Getter for the field checksums.

Methods in psidev.psi.mi.jami.model.impl with parameters of type Checksum

Modifier and Type	Method	Description
protected void	AbstractInteraction.processAddedChecksumEvent(Checksum added)	processAddedChecksumEvent
protected void	DefaultBioactiveEntity.processAddedChecksumEvent(Checksum added)	processAddedChecksumEvent
protected void	DefaultComplex.processAddedChecksumEvent(Checksum added)	processAddedChecksumEvent
protected void	DefaultProtein.processAddedChecksumEvent(Checksum added)	processAddedChecksumEvent
protected void	AbstractInteraction.processRemovedChecksumEvent(Checksum removed)	processRemovedChecksumEvent
protected void	DefaultBioactiveEntity.processRemovedChecksumEvent(Checksum removed)	processRemovedChecksumEvent
protected void	DefaultComplex.processRemovedChecksumEvent(Checksum removed)	processRemovedChecksumEvent
protected void	DefaultProtein.processRemovedChecksumEvent(Checksum removed)	processRemovedChecksumEvent

Method parameters in psidev.psi.mi.jami.model.impl with type arguments of type Checksum

Modifier and Type	Method	Description
protected void	DefaultInteractor.initialiseChecksumsWith(Collection<Checksum> checksums)	initialiseChecksumsWith
protected void	AbstractInteraction.initialiseChecksumWith(Collection<Checksum> checksums)	initialiseChecksumWith

Uses of Checksum in psidev.psi.mi.jami.tab.extension

Classes in psidev.psi.mi.jami.tab.extension that implement Checksum

Modifier and Type	Class	Description
class	MitabChecksum	Mitab extension for Checksum.

Uses of Checksum in psidev.psi.mi.jami.tab.io.writer.feeder

Methods in psidev.psi.mi.jami.tab.io.writer.feeder with parameters of type Checksum

Modifier and Type	Method	Description
void	AbstractMitabColumnFeeder.writeChecksum(Checksum checksum)	Writes the checksum
void	MitabColumnFeeder.writeChecksum(Checksum checksum)	Writes the checksum

Uses of Checksum in psidev.psi.mi.jami.utils

Methods in psidev.psi.mi.jami.utils that return Checksum

Modifier and Type	Method	Description
static Checksum	ChecksumUtils.collectFirstChecksumWithMethod(Collection<? extends Checksum> checksums, String methodId, String methodName)	This method will return the first Checksum having this methodId/method name It will return null if there are no Checksums with this method id/name
static Checksum	ChecksumUtils.collectFirstChecksumWithMethodAndValue(Collection<? extends Checksum> checksums, String methodId, String methodName, String value)	This method will return the first Checksum having this methodId/method name It will return null if there are no Checksums with this method id/name
static Checksum	ChecksumUtils.createChecksum(String methodName, String checksum)	createChecksum
static Checksum	ChecksumUtils.createChecksum(String methodName, String methodMi, String checksum)	createChecksum
static Checksum	ChecksumUtils.createRigid(String checksum)	createRigid
static Checksum	ChecksumUtils.createRogid(String checksum)	createRogid
static Checksum	ChecksumUtils.createSmile(String checksum)	createSmile
static Checksum	ChecksumUtils.createStandardInchi(String checksum)	createStandardInchi
static Checksum	ChecksumUtils.createStandardInchiKey(String checksum)	createStandardInchiKey

Methods in psidev.psi.mi.jami.utils that return types with arguments of type Checksum

Modifier and Type	Method	Description
static Collection<Checksum>	ChecksumUtils.collectAllChecksumsHavingMethod(Collection<? extends Checksum> checksums, String methodId, String methodName)	Collect all checksum having a specific method
static Collection<Checksum>	ChecksumUtils.collectAllChecksumsHavingMethodAndValue(Collection<? extends Checksum> checksums, String methodId, String methodName, String value)	Collect all checksum having a specific method

Methods in psidev.psi.mi.jami.utils with parameters of type Checksum

Modifier and Type	Method	Description
static boolean	ChecksumUtils.doesChecksumHaveMethod(Checksum checksum, String methodId, String methodName)	To check if a checksum does have a specific method
static boolean	ChecksumUtils.doesChecksumHaveMethodAndValue(Checksum checksum, String methodId, String methodName, String value)	To check if a checksum does have a specific method

Method parameters in psidev.psi.mi.jami.utils with type arguments of type Checksum

Modifier and Type	Method	Description
static Collection<Checksum>	ChecksumUtils.collectAllChecksumsHavingMethod(Collection<? extends Checksum> checksums, String methodId, String methodName)	Collect all checksum having a specific method
static Collection<Checksum>	ChecksumUtils.collectAllChecksumsHavingMethodAndValue(Collection<? extends Checksum> checksums, String methodId, String methodName, String value)	Collect all checksum having a specific method
static Checksum	ChecksumUtils.collectFirstChecksumWithMethod(Collection<? extends Checksum> checksums, String methodId, String methodName)	This method will return the first Checksum having this methodId/method name It will return null if there are no Checksums with this method id/name
static Checksum	ChecksumUtils.collectFirstChecksumWithMethodAndValue(Collection<? extends Checksum> checksums, String methodId, String methodName, String value)	This method will return the first Checksum having this methodId/method name It will return null if there are no Checksums with this method id/name
static void	ChecksumUtils.removeAllChecksumWithMethod(Collection<? extends Checksum> checksums, String methodId, String methodName)	Remove all Checksum having this method name/method id from the collection of checksums
static void	ChecksumUtils.removeAllChecksumWithMethod(Collection<? extends Checksum> checksums, String methodId, String methodName, String value)	Remove all Checksum having this method name/method id from the collection of checksums

Uses of Checksum in psidev.psi.mi.jami.utils.comparator.checksum

Methods in psidev.psi.mi.jami.utils.comparator.checksum with parameters of type Checksum

Modifier and Type	Method	Description
static boolean	DefaultChecksumComparator.areEquals(Checksum checksum1, Checksum checksum2)	Use DefaultChecksumComparator to know if two checksum are equals.
static boolean	UnambiguousChecksumComparator.areEquals(Checksum checksum1, Checksum checksum2)	Use UnambiguousChecksumComparator to know if two checksum are equals.
int	ChecksumComparator.compare(Checksum checksum1, Checksum checksum2)	It will first compares the method using a CvTermComparator and then it will compare the checksum values - Two annotations which are null are equals - The annotation which is not null is before null.
int	UnambiguousChecksumComparator.compare(Checksum checksum1, Checksum checksum2)	It will first compares the method using a UnambiguousCvTermComparator and then it will compare the checksum values - Two annotations which are null are equals - The annotation which is not null is before null.
static int	UnambiguousChecksumComparator.hashCode(Checksum checksum)	hashCode

Uses of Checksum in psidev.psi.mi.jami.xml.io.writer.elements

Methods in psidev.psi.mi.jami.xml.io.writer.elements that return types with arguments of type Checksum

Modifier and Type	Method	Description
static PsiXmlElementWriter<Checksum>	PsiXmlElementWriterFactory.createChecksumWriter(XMLStreamWriter streamWriter)	createChecksumWriter.

Uses of Checksum in psidev.psi.mi.jami.xml.io.writer.elements.impl

Methods in psidev.psi.mi.jami.xml.io.writer.elements.impl that return types with arguments of type Checksum

Modifier and Type	Method	Description
PsiXmlElementWriter<Checksum>	XmlInteractorWriter.getChecksumWriter()	Getter for the field checksumWriter.

Methods in psidev.psi.mi.jami.xml.io.writer.elements.impl with parameters of type Checksum

Modifier and Type	Method	Description
void	XmlChecksumWriter.write(Checksum object)	write.

Method parameters in psidev.psi.mi.jami.xml.io.writer.elements.impl with type arguments of type Checksum

Modifier and Type	Method	Description
void	XmlInteractorWriter.setChecksumWriter(PsiXmlElementWriter<Checksum> checksumWriter)	Setter for the field checksumWriter.

Uses of Checksum in psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts

Methods in psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts that return types with arguments of type Checksum

Modifier and Type	Method	Description
PsiXmlElementWriter<Checksum>	AbstractXmlInteractionWriter.getChecksumWriter()	Getter for the field checksumWriter.

Method parameters in psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts with type arguments of type Checksum

Modifier and Type	Method	Description
void	AbstractXmlInteractionWriter.setChecksumWriter(PsiXmlElementWriter<Checksum> checksumWriter)	Setter for the field checksumWriter.

Uses of Checksum in psidev.psi.mi.jami.xml.model.extension

Classes in psidev.psi.mi.jami.xml.model.extension that implement Checksum

Modifier and Type	Class	Description
class	XmlChecksum	Xml implementation of a checksum

Methods in psidev.psi.mi.jami.xml.model.extension that return types with arguments of type Checksum

Modifier and Type	Method	Description
Collection<Checksum>	AbstractBaseXmlInteractor.getChecksums()	getChecksums.

Method parameters in psidev.psi.mi.jami.xml.model.extension with type arguments of type Checksum

Modifier and Type	Method	Description
protected void	AbstractBaseXmlInteractor.AbstractJAXBAttributeWrapper.initialiseChecksumsWith(List<Checksum> checksums)

Uses of Checksum in psidev.psi.mi.jami.xml.model.extension.binary

Methods in psidev.psi.mi.jami.xml.model.extension.binary that return types with arguments of type Checksum

Modifier and Type	Method	Description
Collection<Checksum>	XmlBinaryInteractionEvidenceWrapper.getChecksums()	Set of checksums computed for this interaction..
Collection<Checksum>	XmlBinaryInteractionWrapper.getChecksums()	Set of checksums computed for this interaction..
Collection<Checksum>	XmlModelledBinaryInteractionWrapper.getChecksums()	Set of checksums computed for this interaction..

Uses of Checksum in psidev.psi.mi.jami.xml.model.extension.binary.xml30

Methods in psidev.psi.mi.jami.xml.model.extension.binary.xml30 that return types with arguments of type Checksum

Modifier and Type	Method	Description
Collection<Checksum>	XmlModelledBinaryInteraction.getChecksums()	Getter for the field checksums.
Collection<Checksum>	XmlModelledBinaryInteractionWrapper.getChecksums()	Set of checksums computed for this interaction..

Uses of Checksum in psidev.psi.mi.jami.xml.model.extension.xml253

Methods in psidev.psi.mi.jami.xml.model.extension.xml253 that return types with arguments of type Checksum

Modifier and Type	Method	Description
Collection<Checksum>	AbstractXmlComplex.getChecksums()	getChecksums.
Collection<Checksum>	AbstractXmlInteraction.getChecksums()	getChecksums.
Collection<Checksum>	XmlBasicInteractionComplexWrapper.getChecksums()	Set of checksums computed for this interactor.
Collection<Checksum>	XmlInteractionEvidenceComplexWrapper.getChecksums()	Set of checksums computed for this interactor.
Collection<Checksum>	XmlModelledInteractionComplexWrapper.getChecksums()	Set of checksums computed for this interactor.

Uses of Checksum in psidev.psi.mi.jami.xml.model.extension.xml254

Methods in psidev.psi.mi.jami.xml.model.extension.xml254 that return types with arguments of type Checksum

Modifier and Type	Method	Description
Collection<Checksum>	AbstractXmlComplex.getChecksums()	getChecksums.
Collection<Checksum>	AbstractXmlInteraction.getChecksums()	getChecksums.
Collection<Checksum>	XmlBasicInteractionComplexWrapper.getChecksums()	Set of checksums computed for this interactor.
Collection<Checksum>	XmlInteractionEvidenceComplexWrapper.getChecksums()	Set of checksums computed for this interactor.
Collection<Checksum>	XmlModelledInteractionComplexWrapper.getChecksums()	Set of checksums computed for this interactor.

Uses of Checksum in psidev.psi.mi.jami.xml.model.extension.xml300

Methods in psidev.psi.mi.jami.xml.model.extension.xml300 that return types with arguments of type Checksum

Modifier and Type	Method	Description
Collection<Checksum>	AbstractXmlComplex.getChecksums()	getChecksums.
Collection<Checksum>	AbstractXmlInteraction.getChecksums()	getChecksums.
Collection<Checksum>	XmlBasicInteractionComplexWrapper.getChecksums()	Set of checksums computed for this interactor.
Collection<Checksum>	XmlInteractionEvidenceComplexWrapper.getChecksums()	Set of checksums computed for this interactor.
Collection<Checksum>	XmlModelledInteraction.getChecksums()	getChecksums.
Collection<Checksum>	XmlModelledInteractionComplexWrapper.getChecksums()	Set of checksums computed for this interactor.

Uses of Checksum in psidev.psi.mi.jami.xml.model.reference.xml253

Methods in psidev.psi.mi.jami.xml.model.reference.xml253 that return types with arguments of type Checksum

Modifier and Type	Method	Description
Collection<Checksum>	AbstractComplexRef.getChecksums()	getChecksums.
Collection<Checksum>	AbstractInteractorRef.getChecksums()	getChecksums.

Uses of Checksum in psidev.psi.mi.jami.xml.model.reference.xml254

Methods in psidev.psi.mi.jami.xml.model.reference.xml254 that return types with arguments of type Checksum

Modifier and Type	Method	Description
Collection<Checksum>	AbstractComplexRef.getChecksums()	getChecksums.
Collection<Checksum>	AbstractInteractorRef.getChecksums()	getChecksums.

Uses of Checksum in psidev.psi.mi.jami.xml.model.reference.xml300

Methods in psidev.psi.mi.jami.xml.model.reference.xml300 that return types with arguments of type Checksum

Modifier and Type	Method	Description
Collection<Checksum>	AbstractComplexRef.getChecksums()	getChecksums.
Collection<Checksum>	AbstractInteractorRef.getChecksums()	getChecksums.