Uses of Interface
psidev.psi.mi.jami.model.Molecule

Packages that use Molecule

Package	Description
psidev.psi.mi.jami.crosslink.extension
psidev.psi.mi.jami.model
psidev.psi.mi.jami.model.impl
psidev.psi.mi.jami.tab.extension
psidev.psi.mi.jami.xml.model.extension.xml253
psidev.psi.mi.jami.xml.model.extension.xml254
psidev.psi.mi.jami.xml.model.extension.xml300

Uses of Molecule in psidev.psi.mi.jami.crosslink.extension

Classes in psidev.psi.mi.jami.crosslink.extension that implement Molecule

Modifier and Type	Class	Description
class	CsvProtein	Crosslink CSV extension of Protein.

Uses of Molecule in psidev.psi.mi.jami.model

Subinterfaces of Molecule in psidev.psi.mi.jami.model

Modifier and Type	Interface	Description
interface	BioactiveEntity	Molecules showing activity in a living system and which can interact with other molecules
interface	Gene	Interactor for genetic interactions
interface	NucleicAcid	Polymers of nucleotides which can interact with other molecules
interface	Polymer	A polymer is an interactor with a sequence
interface	Protein	Polymer of amino acids which can interact with other molecules.

Uses of Molecule in psidev.psi.mi.jami.model.impl

Classes in psidev.psi.mi.jami.model.impl that implement Molecule

Modifier and Type	Class	Description
class	DefaultBioactiveEntity	Default implementation for bioactive entity Notes: The equals and hashcode methods have NOT been overridden because the BioactiveEntity object is a complex object.
class	DefaultGene	Default implementation for gene Notes: The equals and hashcode methods have NOT been overridden because the Gene object is a complex object.
class	DefaultMolecule	The default implementation for a molecule Notes: The equals and hashcode methods have NOT been overridden because the molecule object is a complex object.
class	DefaultNucleicAcid	Default implementation for NucleicAcid.
class	DefaultPolymer	Default implementation for Polymer Notes: The equals and hashcode methods have NOT been overridden because the Polymer object is a complex object.
class	DefaultProtein	Default implementation for proteins and peptides Notes: The equals and hashcode methods have NOT been overridden because the Protein object is a complex object.

Uses of Molecule in psidev.psi.mi.jami.tab.extension

Classes in psidev.psi.mi.jami.tab.extension that implement Molecule

Modifier and Type	Class	Description
class	MitabBioactiveEntity	Mitab extension for BioactiveEntity.
class	MitabGene	Mitab extension for Gene.
class	MitabMolecule	Mitab extension for Molecule
class	MitabNucleicAcid	Mitab extension for NucleicAcid It will contain a FileSourceLocator
class	MitabPolymer	Mitab extension of Polymer.
class	MitabProtein	Mitab extension of Protein.

Uses of Molecule in psidev.psi.mi.jami.xml.model.extension.xml253

Classes in psidev.psi.mi.jami.xml.model.extension.xml253 that implement Molecule

Modifier and Type	Class	Description
class	XmlBioactiveEntity	Xml implementation of BioactiveEntity
class	XmlGene	Xml implementation of a Gene
class	XmlMolecule	Xml implementation of molecule
class	XmlNucleicAcid	Xml implementation of Nucleic acid
class	XmlPolymer	Xml implementation of Polymer
class	XmlProtein	Xml implementation of protein

Uses of Molecule in psidev.psi.mi.jami.xml.model.extension.xml254

Classes in psidev.psi.mi.jami.xml.model.extension.xml254 that implement Molecule

Modifier and Type	Class	Description
class	XmlBioactiveEntity	Xml implementation of BioactiveEntity
class	XmlGene	Xml implementation of a Gene
class	XmlMolecule	Xml implementation of molecule
class	XmlNucleicAcid	Xml implementation of Nucleic acid
class	XmlPolymer	Xml implementation of Polymer
class	XmlProtein	Xml implementation of protein

Uses of Molecule in psidev.psi.mi.jami.xml.model.extension.xml300

Classes in psidev.psi.mi.jami.xml.model.extension.xml300 that implement Molecule

Modifier and Type	Class	Description
class	XmlBioactiveEntity	Xml implementation of BioactiveEntity
class	XmlGene	Xml implementation of a Gene
class	XmlMolecule	Xml implementation of molecule
class	XmlNucleicAcid	Xml implementation of Nucleic acid
class	XmlPolymer	Xml implementation of Polymer
class	XmlProtein	Xml implementation of protein