Uses of Interface
psidev.psi.mi.jami.listener.XrefsChangeListener

Packages that use XrefsChangeListener

Package	Description
psidev.psi.mi.jami.enricher
psidev.psi.mi.jami.enricher.impl.full
psidev.psi.mi.jami.enricher.impl.minimal
psidev.psi.mi.jami.enricher.listener
psidev.psi.mi.jami.enricher.listener.impl
psidev.psi.mi.jami.enricher.listener.impl.log
psidev.psi.mi.jami.enricher.listener.impl.writer
psidev.psi.mi.jami.enricher.util
psidev.psi.mi.jami.imex.listener
psidev.psi.mi.jami.imex.listener.impl
psidev.psi.mi.jami.listener
psidev.psi.mi.jami.listener.impl

Uses of XrefsChangeListener in psidev.psi.mi.jami.enricher

Subinterfaces of XrefsChangeListener in psidev.psi.mi.jami.enricher

Modifier and Type	Interface	Description
interface	ProteinListeningFeatureEnricher<F extends Feature>	An extension to the feature enricher, the protein listening form also updates ranges.

Uses of XrefsChangeListener in psidev.psi.mi.jami.enricher.impl.full

Classes in psidev.psi.mi.jami.enricher.impl.full that implement XrefsChangeListener

Modifier and Type	Class	Description
class	FullFeatureEnricher<F extends Feature>	Provides full enrichment of feature.
class	FullFeatureEvidenceEnricher	Provides full enrichment of feature evidence.
class	FullFeatureEvidenceUpdater	Provides full update of feature evidence.
class	FullFeatureUpdater<F extends Feature>	Provides full updater of feature.

Uses of XrefsChangeListener in psidev.psi.mi.jami.enricher.impl.minimal

Classes in psidev.psi.mi.jami.enricher.impl.minimal that implement XrefsChangeListener

Modifier and Type	Class	Description
class	MinimalFeatureEnricher<F extends Feature>	Provides minimal enrichment of feature.
class	MinimalFeatureEvidenceEnricher	Provides minimal enrichment of feature evidence.
class	MinimalFeatureEvidenceUpdater	Provides minimal update of feature evidence.
class	MinimalFeatureUpdater<F extends Feature>	Provides minimal update of feature.

Uses of XrefsChangeListener in psidev.psi.mi.jami.enricher.listener

Subinterfaces of XrefsChangeListener in psidev.psi.mi.jami.enricher.listener

Modifier and Type	Interface	Description
interface	BioactiveEntityEnricherListener	Created with IntelliJ IDEA.
interface	ComplexEnricherListener	Listener for complex enrichment
interface	CvTermEnricherListener<C extends CvTerm>	An extension of the CvTermChangeListener with specific methods related to the process of enriching.
interface	ExperimentalParticipantPoolEnricherListener	Experimental Participant pool enricher listener
interface	ExperimentEnricherListener	//An extension of the ExperimentChangeListener //with specific methods related to the process of enriching.
interface	FeatureEnricherListener<T extends Feature>	An extension of the FeatureChangeListener with specific methods related to the process of enriching.
interface	FeatureEvidenceEnricherListener	An extension of the FeatureChangeListener with specific methods related to the process of enriching.
interface	GeneEnricherListener	Created with IntelliJ IDEA.
interface	InteractionEnricherListener<I extends Interaction>	Listener for interaction enrichment
interface	InteractionEvidenceEnricherListener	Listener for interaction evidence enrichment
interface	InteractorEnricherListener<T extends Interactor>	Interface for interactor enricher listener
interface	InteractorPoolEnricherListener	Interface for interactor pool enricher listener
interface	ModelledInteractionEnricherListener<I extends ModelledInteraction>	Listener for modelled interaction enrichment
interface	OntologyTermEnricherListener	An extension of the OntologyTermChangeListener with specific methods related to the process of enriching.
interface	ParticipantEnricherListener<P extends Participant>	Created with IntelliJ IDEA.
interface	ParticipantEvidenceEnricherListener<P extends ParticipantEvidence>	Created with IntelliJ IDEA.
interface	ParticipantPoolEnricherListener<P extends ParticipantPool>	Participant pool enricher listener
interface	PolymerEnricherListener<T extends Polymer>	Interface for polymer enricher listener
interface	ProteinEnricherListener	Created with IntelliJ IDEA.
interface	PublicationEnricherListener	An extension of the PublicationChangeListener with specific methods related to the process of enriching.
interface	SourceEnricherListener	An extension of the SourceChangeListener with specific methods related to the process of enriching.

Uses of XrefsChangeListener in psidev.psi.mi.jami.enricher.listener.impl

Classes in psidev.psi.mi.jami.enricher.listener.impl that implement XrefsChangeListener

Modifier and Type	Class	Description
class	BioactiveEntityEnricherListenerManager	A manager for listeners which holds a list of listeners.
class	ComplexEnricherListenerManager	A manager for listeners which holds a list of listeners.
class	CvTermEnricherListenerManager<C extends CvTerm>	A manager for listeners which holds a list of listeners.
class	ExperimentalParticipantPoolEnricherListenerManager	A manager for listeners which holds a list of listeners.
class	ExperimentEnricherListenerManager	A manager for listeners which holds a list of listeners.
class	FeatureEnricherListenerManager<T extends Feature>	A manager for listeners which holds a list of listeners.
class	FeatureEvidenceEnricherListenerManager	A manager for listeners which holds a list of listeners.
class	GeneEnricherListenerManager	Created with IntelliJ IDEA.
class	InteractionEnricherListenerManager<I extends Interaction>	A manager for listeners which holds a list of listeners.
class	InteractionEvidenceEnricherListenerManager	A manager for listeners which holds a list of listeners.
class	InteractorEnricherListenerManager<T extends Interactor>	Manager of interactor listeners
class	InteractorPoolEnricherListenerManager	A manager for listeners which holds a list of listeners.
class	ModelledInteractionEnricherListenerManager<I extends ModelledInteraction>	A manager for listeners which holds a list of listeners.
class	OntologyTermEnricherListenerManager	A manager for listeners which holds a list of listeners.
class	ParticipantEnricherListenerManager<P extends Participant>	A manager for listeners which holds a list of listeners.
class	ParticipantEvidenceEnricherListenerManager<P extends ParticipantEvidence>	A manager for listeners which holds a list of listeners.
class	ParticipantPoolEnricherListenerManager<P extends ParticipantPool>	A manager for listeners which holds a list of listeners.
class	PolymerEnricherListenerManager<P extends Polymer>	A manager for listeners which holds a list of listeners.
class	ProteinEnricherListenerManager	A manager for listeners which holds a list of listeners.
class	PublicationEnricherListenerManager	A manager for listeners which holds a list of listeners.
class	SourceEnricherListenerManager	A manager for listeners which holds a list of listeners.

Uses of XrefsChangeListener in psidev.psi.mi.jami.enricher.listener.impl.log

Classes in psidev.psi.mi.jami.enricher.listener.impl.log that implement XrefsChangeListener

Modifier and Type	Class	Description
class	BioactiveEntityEnricherLogger	A logging listener.
class	ComplexEnricherLogger	A logging listener.
class	CvTermEnricherLogger	A logging listener.
class	ExperimentalParticipantPoolEnricherLogger	A logging listener.
class	ExperimentEnricherLogger	A logging listener.
class	FeatureEnricherLogger<T extends Feature>	A logging listener.
class	FeatureEvidenceEnricherLogger	A logging listener.
class	GeneEnricherLogger	Created with IntelliJ IDEA.
class	InteractionEnricherLogger<I extends Interaction>	A logging listener.
class	InteractionEvidenceEnricherLogger	A logging listener.
class	InteractorEnricherLogger<T extends Interactor>	Logger of interactor enrichment
class	InteractorPoolEnricherLogger	A logging listener.
class	ModelledInteractionEnricherLogger<I extends ModelledInteraction>	A logging listener.
class	OntologyTermEnricherLogger	A logging listener.
class	ParticipantEnricherLogger<P extends Participant>	A logging listener.
class	ParticipantEvidenceEnricherLogger<P extends ParticipantEvidence>	A logging listener.
class	ParticipantPoolEnricherLogger<P extends ParticipantPool>	A logging listener.
class	PolymerEnricherLogger<P extends Polymer>	A logging listener.
class	ProteinEnricherLogger	A logging listener.
class	PublicationEnricherLogger	A logging listener.
class	SourceEnricherLogger	A logging listener.

Uses of XrefsChangeListener in psidev.psi.mi.jami.enricher.listener.impl.writer

Classes in psidev.psi.mi.jami.enricher.listener.impl.writer that implement XrefsChangeListener

Modifier and Type	Class	Description
class	BioactiveEntityEnricherStatisticsWriter	A statistics logger which records changes made by the enricher.
class	ComplexEnricherStatisticsWriter	A statistics logger which records changes made by the enricher.
class	CvTermEnricherStatisticsWriter<C extends CvTerm>	A statistics logger which records changes made by the enricher.
class	ExperimentalParticipantPoolEnricherStatisticsWriter	A statistics logger which records changes made by the enricher.
class	ExperimentEnricherStatisticsWriter	A statistics logger which records changes made by the enricher.
class	FeatureEnricherStatisticsWriter<T extends Feature>	A statistics logger which records changes made by the enricher.
class	FeatureEvidenceEnricherStatisticsWriter	A statistics logger which records changes made by the enricher.
class	GeneEnricherStatisticsWriter	Created with IntelliJ IDEA.
class	InteractionEnricherStatisticsWriter<I extends Interaction>	A statistics logger which records changes made by the enricher.
class	InteractionEvidenceEnricherStatisticsWriter	A statistics logger which records changes made by the enricher.
class	InteractorEnricherStatisticsWriter<T extends Interactor>	TODO comment this
class	InteractorPoolEnricherStatisticsWriter	A statistics logger which records changes made by the enricher.
class	ModelledInteractionEnricherStatisticsWriter<I extends ModelledInteraction>	A statistics logger which records changes made by the enricher.
class	OntologyTermEnricherStatisticsWriter	A statistics logger which records changes made by the enricher.
class	ParticipantEnricherStatisticsWriter<P extends Participant>	A statistics logger which records changes made by the enricher.
class	ParticipantEvidenceEnricherStatisticsWriter<P extends ParticipantEvidence>	A statistics logger which records changes made by the enricher.
class	ParticipantPoolEnricherStatisticsWriter<P extends ParticipantPool>	A statistics logger which records changes made by the enricher.
class	PolymerEnricherStatisticsWriter<P extends Polymer>	A statistics logger which records changes made by the enricher.
class	ProteinEnricherStatisticsWriter	A statistics logger which records changes made by the enricher.
class	PublicationEnricherStatisticsWriter	A statistics logger which records changes made by the enricher.
class	SourceEnricherStatisticsWriter	A statistics logger which records changes made by the enricher.

Uses of XrefsChangeListener in psidev.psi.mi.jami.enricher.util

Methods in psidev.psi.mi.jami.enricher.util with parameters of type XrefsChangeListener

Modifier and Type	Method	Description
static <T> void	EnricherUtils.mergeXrefs(T termToEnrich, Collection<Xref> toEnrichXrefs, Collection<Xref> fetchedXrefs, boolean remove, boolean isIdentifier, XrefsChangeListener<T> xrefListener, IdentifiersChangeListener<T> identifierListener)	Takes two lists of Xrefs and produces a list of those to add and those to remove.

Uses of XrefsChangeListener in psidev.psi.mi.jami.imex.listener

Subinterfaces of XrefsChangeListener in psidev.psi.mi.jami.imex.listener

Modifier and Type	Interface	Description
interface	ExperimentImexEnricherListener	An extension of the ExperimentEnricherListener with specific methods related to the process of enriching.
interface	InteractionImexEnricherListener	An extension of the ExperimentEnricherListener with specific methods related to the process of enriching.
interface	PublicationImexEnricherListener	An extension of the PublicationEnricherListener with specific methods related to the process of enriching.

Uses of XrefsChangeListener in psidev.psi.mi.jami.imex.listener.impl

Classes in psidev.psi.mi.jami.imex.listener.impl that implement XrefsChangeListener

Modifier and Type	Class	Description
class	ExperimentImexEnricherListenerManager	A manager for listeners which holds a list of listeners.
class	ExperimentImexEnricherLogger	A logging listener.
class	ExperimentImexEnricherStatisticsWriter	A statistics logger which records changes made by the enricher.
class	InteractionEvidenceImexEnricherListenerManager	A manager for listeners which holds a list of listeners.
class	InteractionEvidenceImexEnricherLogger	A logging listener.
class	InteractionEvidenceImexEnricherStatisticsWriter	A statistics logger which records changes made by the enricher.
class	PublicationImexEnricherListenerManager	A manager for listeners which holds a list of listeners.
class	PublicationImexEnricherLogger	A logging listener.
class	PublicationImexEnricherStatisticsWriter	A statistics logger which records changes made by the enricher.

Uses of XrefsChangeListener in psidev.psi.mi.jami.listener

Subinterfaces of XrefsChangeListener in psidev.psi.mi.jami.listener

Modifier and Type	Interface	Description
interface	ComplexChangeListener	Listener for changes in complex
interface	CvTermChangeListener	CvTerm change listener
interface	ExperimentChangeListener	Listener for experiment changes
interface	FeatureChangeListener<F extends Feature>	Listener to feature change events
interface	FeatureEvidenceChangeListener	Listener which listen to changes in feature evidence
interface	InteractionChangeListener<I extends Interaction>	Listener for changes in interaction
interface	InteractionEvidenceChangeListener	Listener for changes in interaction evidence
interface	InteractorChangeListener<T extends Interactor>	A generic listener for an interactor.
interface	InteractorPoolChangeListener	Listener of changes in interactor pool
interface	ModelledInteractionChangeListener<I extends ModelledInteraction>	Listener for changes in modelled interaction
interface	OntologyTermChangeListener	OntologyTerm change listener
interface	ParticipantChangeListener<F extends Participant>	Listener for changes in a participant
interface	ParticipantEvidenceChangeListener<F extends ParticipantEvidence>	Listener for changes in an experimental entity
interface	ParticipantPoolChangeListener<F extends ParticipantPool>	Listener for changes in a participant pool
interface	PolymerChangeListener<P extends Polymer>	Listener for changes in polymer
interface	ProteinChangeListener	This listener listen to Protein changes
interface	PublicationChangeListener	Listener to publication changes
interface	SourceChangeListener	Source change listener

Uses of XrefsChangeListener in psidev.psi.mi.jami.listener.impl

Classes in psidev.psi.mi.jami.listener.impl that implement XrefsChangeListener

Modifier and Type	Class	Description
class	ComplexChangeLogger	This listener will just complex change events
class	CvTermChangeLogger	This listener will just log cvTerm change events
class	ExperimentalParticipantPoolChangeLogger	This listener will just interactor change events
class	ExperimentChangeLogger	This listener will listen to experiment change events
class	FeatureChangeLogger<T extends Feature>	This listener will just interactor change events
class	FeatureEvidenceChangeLogger	This listener will just interactor change events
class	InteractionChangeLogger<T extends Interaction>	This listener will just interaction change events
class	InteractionEvidenceChangeLogger	This listener will just interaction evidence change events
class	InteractorChangeLogger<T extends Interactor>	This listener will just interactor change events
class	InteractorPoolChangeLogger	This listener will just interactor pool change events
class	ModelledInteractionChangeLogger<I extends ModelledInteraction>	This listener will just modelledInteraction change events
class	OntologyTermChangeLogger	This listener will just log ontologyTerm change events
class	ParticipantChangeLogger<T extends Participant>	This listener will just interactor change events
class	ParticipantEvidenceChangeLogger<T extends ParticipantEvidence>	This listener will just interactor change events
class	ParticipantPoolChangeLogger<T extends ParticipantPool>	This listener will just interactor change events
class	PolymerChangeLogger<P extends Polymer>	This listener will just protein change events
class	ProteinChangeLogger	This listener will just protein change events
class	PublicationChangeLogger	This listener will listen to publication change events
class	SourceChangeLogger	This listener will just log Source change events