Uses of Interface
psidev.psi.mi.jami.model.CooperativityEvidence

Packages that use CooperativityEvidence

Package	Description
psidev.psi.mi.jami.model
psidev.psi.mi.jami.model.impl
psidev.psi.mi.jami.utils.clone
psidev.psi.mi.jami.utils.comparator.cooperativity
psidev.psi.mi.jami.xml.io.writer.elements
psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts.xml30
psidev.psi.mi.jami.xml.io.writer.elements.impl.xml30
psidev.psi.mi.jami.xml.model.extension.xml253
psidev.psi.mi.jami.xml.model.extension.xml254
psidev.psi.mi.jami.xml.model.extension.xml300

Uses of CooperativityEvidence in psidev.psi.mi.jami.model

Methods in psidev.psi.mi.jami.model with type parameters of type CooperativityEvidence

Modifier and Type	Method	Description
<T extends CooperativityEvidence> Collection<T>	CooperativeEffect.getCooperativityEvidences()	Collection of experimental methods and publications from which this cooperative effect has been inferred.

Uses of CooperativityEvidence in psidev.psi.mi.jami.model.impl

Classes in psidev.psi.mi.jami.model.impl that implement CooperativityEvidence

Modifier and Type	Class	Description
class	DefaultCooperativityEvidence	Default implementation for CooperativityEvidence Notes: The equals and hashcode methods have been overridden to be consistent with UnambiguousCooperativityEvidenceComparator

Methods in psidev.psi.mi.jami.model.impl that return types with arguments of type CooperativityEvidence

Modifier and Type	Method	Description
Collection<CooperativityEvidence>	DefaultCooperativeEffect.getCooperativityEvidences()	Getter for the field cooperativityEvidences.

Method parameters in psidev.psi.mi.jami.model.impl with type arguments of type CooperativityEvidence

Modifier and Type	Method	Description
protected void	DefaultCooperativeEffect.initialiseCooperativityEvidencesWith(Collection<CooperativityEvidence> evidences)	initialiseCooperativityEvidencesWith

Uses of CooperativityEvidence in psidev.psi.mi.jami.utils.clone

Methods in psidev.psi.mi.jami.utils.clone with parameters of type CooperativityEvidence

Modifier and Type	Method	Description
static void	CooperativityEvidenceCloner.copyAndOverrideCooperativityEvidenceProperties(CooperativityEvidence source, CooperativityEvidence target)	This method will copy properties of CooperativityEvidence source in CooperativityEvidence target and will override all the other properties of Target CooperativityEvidence.

Uses of CooperativityEvidence in psidev.psi.mi.jami.utils.comparator.cooperativity

Methods in psidev.psi.mi.jami.utils.comparator.cooperativity that return types with arguments of type CooperativityEvidence

Modifier and Type	Method	Description
CollectionComparator<CooperativityEvidence>	CooperativeEffectBaseComparator.getCooperativityEvidenceCollectionComparator()	Getter for the field cooperativityEvidenceCollectionComparator.

Methods in psidev.psi.mi.jami.utils.comparator.cooperativity with parameters of type CooperativityEvidence

Modifier and Type	Method	Description
static boolean	DefaultCooperativityEvidenceComparator.areEquals(CooperativityEvidence cooperativityEvidence1, CooperativityEvidence cooperativityEvidence2)	Use DefaultCooperativityEvidenceComparator to know if two cooperativityEvidences are equals.
static boolean	UnambiguousCooperativityEvidenceComparator.areEquals(CooperativityEvidence evidence1, CooperativityEvidence evidence2)	Use UnambiguousCooperativityEvidenceComparator to know if two cooperativityEvidences are equals.
int	CooperativityEvidenceComparator.compare(CooperativityEvidence cooperativityEvidence1, CooperativityEvidence cooperativityEvidence2)	It will first compare the publications using AbstractPublicationComparator and then the evidenceMethods using AbstractCvTermComparator
int	UnambiguousCooperativityEvidenceComparator.compare(CooperativityEvidence evidence1, CooperativityEvidence evidence2)	It will first compare the publications using DefaultPublicationComparator and then the evidenceMethods using DefaultCvTermComparator
static int	UnambiguousCooperativityEvidenceComparator.hashCode(CooperativityEvidence evidence)	hashCode

Constructor parameters in psidev.psi.mi.jami.utils.comparator.cooperativity with type arguments of type CooperativityEvidence

Constructor	Description
CooperativeEffectBaseComparator(Comparator<CvTerm> cvTermComparator, CollectionComparator<CooperativityEvidence> cooperativityEvidenceComparator, CollectionComparator<ModelledInteraction> modelledInteractionComparator)	Constructor for CooperativeEffectBaseComparator.

Uses of CooperativityEvidence in psidev.psi.mi.jami.xml.io.writer.elements

Methods in psidev.psi.mi.jami.xml.io.writer.elements that return types with arguments of type CooperativityEvidence

Modifier and Type	Method	Description
static PsiXmlElementWriter<CooperativityEvidence>	PsiXmlElementWriterFactory.createCooperativityEvidenceWriter(XMLStreamWriter streamWriter, boolean expanded, PsiXmlVariableNameWriter<CvTerm> cvWriter, PsiXmlPublicationWriter publicationWriter)	createCooperativityEvidenceWriter.

Uses of CooperativityEvidence in psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts.xml30

Methods in psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts.xml30 that return types with arguments of type CooperativityEvidence

Modifier and Type	Method	Description
PsiXmlElementWriter<CooperativityEvidence>	AbstractXmlCooperativeEffectWriter.getCooperativityEvidenceWriter()	Getter for the field cooperativityEvidenceWriter.

Method parameters in psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts.xml30 with type arguments of type CooperativityEvidence

Modifier and Type	Method	Description
void	AbstractXmlCooperativeEffectWriter.setCooperativityEvidenceWriter(PsiXmlElementWriter<CooperativityEvidence> cooperativityEvidenceWriter)	Setter for the field cooperativityEvidenceWriter.

Uses of CooperativityEvidence in psidev.psi.mi.jami.xml.io.writer.elements.impl.xml30

Methods in psidev.psi.mi.jami.xml.io.writer.elements.impl.xml30 with parameters of type CooperativityEvidence

Modifier and Type	Method	Description
void	XmlCooperativityEvidenceWriter.write(CooperativityEvidence object)	write.
protected void	XmlCooperativityEvidenceWriter.writePublication(CooperativityEvidence object)	writePublication.

Uses of CooperativityEvidence in psidev.psi.mi.jami.xml.model.extension.xml253

Classes in psidev.psi.mi.jami.xml.model.extension.xml253 that implement CooperativityEvidence

Modifier and Type	Class	Description
class	XmlCooperativityEvidence	Xml implementation for cooperativity evidence

Uses of CooperativityEvidence in psidev.psi.mi.jami.xml.model.extension.xml254

Classes in psidev.psi.mi.jami.xml.model.extension.xml254 that implement CooperativityEvidence

Modifier and Type	Class	Description
class	XmlCooperativityEvidence	Xml implementation for cooperativity evidence

Uses of CooperativityEvidence in psidev.psi.mi.jami.xml.model.extension.xml300

Classes in psidev.psi.mi.jami.xml.model.extension.xml300 that implement CooperativityEvidence

Modifier and Type	Class	Description
class	XmlCooperativityEvidence	Xml 3.0 implementation for cooperativity evidence

Methods in psidev.psi.mi.jami.xml.model.extension.xml300 that return types with arguments of type CooperativityEvidence

Modifier and Type	Method	Description
Collection<CooperativityEvidence>	AbstractXmlCooperativeEffect.getCooperativityEvidences()	getCooperativityEvidences.
List<CooperativityEvidence>	AbstractXmlCooperativeEffect.JAXBCooperativityEvidenceWrapper.getJAXBCooperativityEvidences()