Uses of Interface
psidev.psi.mi.jami.xml.io.writer.elements.PsiXmlInteractionWriter

Packages that use PsiXmlInteractionWriter

Package	Description
psidev.psi.mi.jami.xml.io.writer
psidev.psi.mi.jami.xml.io.writer.compact
psidev.psi.mi.jami.xml.io.writer.elements
psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts
psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts.xml25
psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts.xml30
psidev.psi.mi.jami.xml.io.writer.elements.impl.compact.xml25
psidev.psi.mi.jami.xml.io.writer.elements.impl.compact.xml30
psidev.psi.mi.jami.xml.io.writer.elements.impl.expanded.xml25
psidev.psi.mi.jami.xml.io.writer.elements.impl.expanded.xml30
psidev.psi.mi.jami.xml.io.writer.elements.impl.extended
psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.compact.xml25
psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.compact.xml30
psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.expanded.xml25
psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.expanded.xml30
psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.xml25
psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.xml30
psidev.psi.mi.jami.xml.io.writer.expanded

Uses of PsiXmlInteractionWriter in psidev.psi.mi.jami.xml.io.writer

Methods in psidev.psi.mi.jami.xml.io.writer that return PsiXmlInteractionWriter

Modifier and Type	Method	Description
protected PsiXmlInteractionWriter<ModelledInteraction>	AbstractXmlWriter.getComplexWriter()	Getter for the field complexWriter.
protected PsiXmlInteractionWriter<T>	AbstractXmlWriter.getInteractionWriter()	Getter for the field interactionWriter.

Methods in psidev.psi.mi.jami.xml.io.writer with parameters of type PsiXmlInteractionWriter

Modifier and Type	Method	Description
void	AbstractXmlWriter.setComplexWriter(PsiXmlInteractionWriter<ModelledInteraction> complexWriter)	Setter for the field complexWriter.
protected void	AbstractXmlWriter.setInteractionWriter(PsiXmlInteractionWriter<T> interactionWriter)	Setter for the field interactionWriter.

Uses of PsiXmlInteractionWriter in psidev.psi.mi.jami.xml.io.writer.compact

Methods in psidev.psi.mi.jami.xml.io.writer.compact with parameters of type PsiXmlInteractionWriter

Modifier and Type	Method	Description
void	AbstractCompactXmlMixWriter.setComplexWriter(PsiXmlInteractionWriter<ModelledInteraction> complexWriter)	Setter for the field complexWriter.

Uses of PsiXmlInteractionWriter in psidev.psi.mi.jami.xml.io.writer.elements

Subinterfaces of PsiXmlInteractionWriter in psidev.psi.mi.jami.xml.io.writer.elements

Modifier and Type	Interface	Description
interface	PsiXmlExtendedInteractionWriter<T extends Interaction>	Interface for interaction writers writing extensions

Methods in psidev.psi.mi.jami.xml.io.writer.elements that return PsiXmlInteractionWriter

Modifier and Type	Method	Description
static PsiXmlInteractionWriter[]	PsiXmlElementWriterFactory.createDefaultPsiXmlInteractionWriters(XMLStreamWriter streamWriter, PsiXmlObjectCache objectIndex, PsiXmlVersion version, PsiXmlType xmlType, InteractionCategory interactionCategory, ComplexType complexType, PsiXmlElementWriter<Alias> aliasWriter, PsiXmlElementWriter<Annotation> attributeWriter, PsiXmlXrefWriter primaryRefWriter, PsiXmlElementWriter[] confidenceWriters, PsiXmlElementWriter<Checksum> checksumWriter, PsiXmlVariableNameWriter<CvTerm> interactionTypeWriter, PsiXmlExperimentWriter experimentWriter, PsiXmlElementWriter<String> availabilityWriter, PsiXmlParameterWriter[] parameterWriters, PsiXmlParticipantWriter[] participantWriters, PsiXmlElementWriter inferredInteractionWriter, PsiXmlPublicationWriter publicationWriter, PsiXmlVariableNameWriter<CvTerm> openCvWriter)	createDefaultPsiXmlInteractionWriters.
static PsiXmlInteractionWriter[]	PsiXmlElementWriterFactory.createExtendedPsiXmlInteractionWriters(XMLStreamWriter streamWriter, PsiXmlObjectCache objectIndex, PsiXmlVersion version, PsiXmlType xmlType, InteractionCategory interactionCategory, ComplexType complexType, PsiXmlElementWriter<Alias> aliasWriter, PsiXmlElementWriter<Annotation> attributeWriter, PsiXmlXrefWriter primaryRefWriter, PsiXmlElementWriter[] confidenceWriters, PsiXmlElementWriter<Checksum> checksumWriter, PsiXmlVariableNameWriter<CvTerm> interactionTypeWriter, PsiXmlExperimentWriter experimentWriter, PsiXmlElementWriter<String> availabilityWriter, PsiXmlParameterWriter[] parameterWriters, PsiXmlParticipantWriter[] participantWriters, PsiXmlElementWriter inferredInteractionWriter, PsiXmlPublicationWriter publicationWriter, PsiXmlVariableNameWriter<CvTerm> openCvWriter)	createExtendedPsiXmlInteractionWriters.
static PsiXmlInteractionWriter[]	PsiXmlElementWriterFactory.createInteractionWritersFor(XMLStreamWriter streamWriter, PsiXmlObjectCache objectIndex, PsiXmlVersion version, PsiXmlType xmlType, InteractionCategory interactionCategory, ComplexType complexType, boolean extended, boolean named, PsiXmlElementWriter<Alias> aliasWriter, PsiXmlElementWriter<Annotation> attributeWriter, PsiXmlXrefWriter primaryRefWriter, PsiXmlElementWriter[] confidenceWriters, PsiXmlElementWriter<Checksum> checksumWriter, PsiXmlVariableNameWriter<CvTerm> interactionTypeWriter, PsiXmlVariableNameWriter<CvTerm> openCvWriter, PsiXmlExperimentWriter experimentWriter, PsiXmlElementWriter<String> availabilityWriter, PsiXmlElementWriter<Interactor> interactorWriter, PsiXmlPublicationWriter publicationWriter)	createInteractionWritersFor.
static PsiXmlInteractionWriter[]	PsiXmlElementWriterFactory.createNamedPsiXmlInteractionWriters(XMLStreamWriter streamWriter, PsiXmlObjectCache objectIndex, PsiXmlVersion version, PsiXmlType xmlType, InteractionCategory interactionCategory, ComplexType complexType, PsiXmlElementWriter<Alias> aliasWriter, PsiXmlElementWriter<Annotation> attributeWriter, PsiXmlXrefWriter primaryRefWriter, PsiXmlElementWriter[] confidenceWriters, PsiXmlElementWriter<Checksum> checksumWriter, PsiXmlVariableNameWriter<CvTerm> interactionTypeWriter, PsiXmlExperimentWriter experimentWriter, PsiXmlElementWriter<String> availabilityWriter, PsiXmlParameterWriter[] parameterWriters, PsiXmlParticipantWriter[] participantWriters, PsiXmlElementWriter inferredInteractionWriter, PsiXmlPublicationWriter publicationWriter, PsiXmlVariableNameWriter<CvTerm> openCvWriter)	createNamedPsiXmlInteractionWriters.

Uses of PsiXmlInteractionWriter in psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts

Classes in psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts that implement PsiXmlInteractionWriter

Modifier and Type	Class	Description
class	AbstractXmlInteractionEvidenceWriter<I extends InteractionEvidence>	Abstract class for interaction evidence writers
class	AbstractXmlInteractionWriter<T extends Interaction,P extends Participant>	Abstract writer of interaction
class	AbstractXmlModelledInteractionWriter<I extends ModelledInteraction>	Abstract class for XML writers of modelled interaction

Uses of PsiXmlInteractionWriter in psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts.xml25

Classes in psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts.xml25 that implement PsiXmlInteractionWriter

Modifier and Type	Class	Description
class	AbstractXmlInteractionEvidenceWriter<I extends InteractionEvidence>	Abstract class for interaction evidence writers
class	AbstractXmlInteractionWriter<T extends Interaction>	Abstract writer of interaction in PSI-XML 2.5
class	AbstractXmlModelledInteractionWriter<I extends ModelledInteraction>	Abstract class for XML 2.5 writers of modelled interaction

Uses of PsiXmlInteractionWriter in psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts.xml30

Classes in psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts.xml30 that implement PsiXmlInteractionWriter

Modifier and Type	Class	Description
class	AbstractXmlInteractionEvidenceWriter<I extends InteractionEvidence>	Abstract class for interaction evidence writers in PSI-MI XML 3.0
class	AbstractXmlModelledInteractionWriter<I extends ModelledInteraction>	Abstract class for XML 3.0 writers of modelled interaction

Uses of PsiXmlInteractionWriter in psidev.psi.mi.jami.xml.io.writer.elements.impl.compact.xml25

Classes in psidev.psi.mi.jami.xml.io.writer.elements.impl.compact.xml25 that implement PsiXmlInteractionWriter

Modifier and Type	Class	Description
class	XmlBasicBinaryInteractionWriter	Compact XML 2.5 writer for a basic binary interaction (ignore experimental details)
class	XmlBasicInteractionWriter	Compact XML 2.5 writer for a basic interaction (ignore experimental details)
class	XmlBinaryInteractionEvidenceWriter	Compact XML 2.5 writer for a binary interaction evidence (with full experimental details).
class	XmlComplexWriter	Compact XML 2.5 writer for a biological complex (ignore experimental details).
class	XmlInteractionEvidenceWriter	Compact XML 2.5 writer for an interaction evidence (with full experimental details).
class	XmlModelledBinaryInteractionWriter	Compact XML 2.5 writer for a modelled binary interaction (ignore experimental details).
class	XmlModelledInteractionWriter	Compact XML 2.5 writer for a modelled interaction (ignore experimental details).
class	XmlNamedBinaryInteractionEvidenceWriter	Compact XML 2.5 writer for a named binary interaction evidence (with full experimental details).
class	XmlNamedBinaryInteractionWriter	Compact XML 2.5 writer for a basic binary interaction (ignore experimental details) which has a fullname and aliases in addition to a shortname
class	XmlNamedInteractionEvidenceWriter	Compact XML 2.5 writer for a named interaction evidence (with full experimental details).
class	XmlNamedInteractionWriter	Compact XML 2.5 writer for a basic interaction (ignore experimental details) which has a fullname and aliases in addition to a shortname
class	XmlNamedModelledBinaryInteractionWriter	Compact XML 2.5 writer for a modelled binary interaction (ignore experimental details) which have a fullname and aliases in addition to the shortname.
class	XmlNamedModelledInteractionWriter	Compact XML 2.5 writer for a modelled interaction (ignore experimental details) which have a fullname and aliases in addition to the shortname.

Uses of PsiXmlInteractionWriter in psidev.psi.mi.jami.xml.io.writer.elements.impl.compact.xml30

Classes in psidev.psi.mi.jami.xml.io.writer.elements.impl.compact.xml30 that implement PsiXmlInteractionWriter

Modifier and Type	Class	Description
class	XmlBinaryInteractionEvidenceWriter	Compact XML 3.0 writer for a binary interaction evidence (with full experimental details).
class	XmlInteractionEvidenceWriter	Compact XML 3.0 writer for an interaction evidence (with full experimental details).
class	XmlModelledBinaryInteractionWriter	Compact XML 3.0 writer for a modelled binary interaction (ignore experimental details).
class	XmlModelledInteractionWriter	Compact XML 3.0 writer for a modelled interaction (ignore experimental details).
class	XmlNamedBinaryInteractionEvidenceWriter	Compact XML 3.0 writer for a named binary interaction evidence (with full experimental details).
class	XmlNamedInteractionEvidenceWriter	Compact XML 3.0 writer for a named interaction evidence (with full experimental details).
class	XmlNamedModelledBinaryInteractionWriter	Compact XML 3.0 writer for a modelled binary interaction (ignore experimental details) which have a fullname and aliases in addition to the shortname.
class	XmlNamedModelledInteractionWriter	Compact XML 3.0 writer for a modelled interaction (ignore experimental details) which have a fullname and aliases in addition to the shortname.

Uses of PsiXmlInteractionWriter in psidev.psi.mi.jami.xml.io.writer.elements.impl.expanded.xml25

Classes in psidev.psi.mi.jami.xml.io.writer.elements.impl.expanded.xml25 that implement PsiXmlInteractionWriter

Modifier and Type	Class	Description
class	XmlBasicBinaryInteractionWriter	Expanded XML 2.5 writer for a basic binary interaction (ignore experimental details)
class	XmlBasicInteractionWriter	Expanded XML 2.5 writer for a basic interaction (ignore experimental details)
class	XmlBinaryInteractionEvidenceWriter	Expanded XML 2.5 writer for a binary interaction evidence (with full experimental details).
class	XmlComplexWriter	Expanded XML 2.5 writer for a biological complex (ignore experimental details).
class	XmlInteractionEvidenceWriter	Expanded XML 2.5 writer for an interaction evidence (with full experimental details).
class	XmlModelledBinaryInteractionWriter	Expanded XML 2.5 writer for a modelled binary interaction (ignore experimental details).
class	XmlModelledInteractionWriter	Expanded XML 2.5 writer for a modelled interaction (ignore experimental details).
class	XmlNamedBinaryInteractionEvidenceWriter	Expanded XML 2.5 writer for a named binary interaction evidence (with full experimental details).
class	XmlNamedBinaryInteractionWriter	Expanded XML 2.5 writer for a basic binary interaction (ignore experimental details).
class	XmlNamedInteractionEvidenceWriter	Expanded XML 2.5 writer for a named interaction evidence (with full experimental details).
class	XmlNamedInteractionWriter	Expanded XML 2.5 writer for a basic interaction (ignore experimental details).
class	XmlNamedModelledBinaryInteractionWriter	Expanded XML 2.5 writer for a binary modelled interaction (ignore experimental details) which have a fullname and aliases in addition to the shortname.
class	XmlNamedModelledInteractionWriter	Expanded XML 2.5 writer for a modelled interaction (ignore experimental details) which have a fullname and aliases in addition to the shortname.

Uses of PsiXmlInteractionWriter in psidev.psi.mi.jami.xml.io.writer.elements.impl.expanded.xml30

Classes in psidev.psi.mi.jami.xml.io.writer.elements.impl.expanded.xml30 that implement PsiXmlInteractionWriter

Modifier and Type	Class	Description
class	XmlBinaryInteractionEvidenceWriter	Expanded XML 3.0 writer for a binary interaction evidence (with full experimental details).
class	XmlInteractionEvidenceWriter	Expanded XML 3.0 writer for an interaction evidence (with full experimental details).
class	XmlModelledBinaryInteractionWriter	Expanded XML 3.0 writer for a modelled binary interaction (ignore experimental details).
class	XmlModelledInteractionWriter	Expanded XML 3.0 writer for a modelled interaction (ignore experimental details).
class	XmlNamedBinaryInteractionEvidenceWriter	Expanded XML 3.0 writer for a named binary interaction evidence (with full experimental details).
class	XmlNamedInteractionEvidenceWriter	Expanded XML 3.0writer for a named interaction evidence (with full experimental details).
class	XmlNamedModelledBinaryInteractionWriter	Expanded XML 3.0 writer for a binary modelled interaction (ignore experimental details) which have a fullname and aliases in addition to the shortname.
class	XmlNamedModelledInteractionWriter	Expanded XML 3.0 writer for a modelled interaction (ignore experimental details) which have a fullname and aliases in addition to the shortname.

Uses of PsiXmlInteractionWriter in psidev.psi.mi.jami.xml.io.writer.elements.impl.extended

Classes in psidev.psi.mi.jami.xml.io.writer.elements.impl.extended that implement PsiXmlInteractionWriter

Modifier and Type	Class	Description
class	AbstractXmlInteractionEvidenceWriter<I extends InteractionEvidence>	Abstract class for interaction evidence writers that write expanded interactions (having modelled, intramolecular properties, list of experiments, list of interaction types, etc.)
class	AbstractXmlModelledInteractionWriter<I extends ModelledInteraction>	Abstract class for XML writers of modelled interaction

Uses of PsiXmlInteractionWriter in psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.compact.xml25

Classes in psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.compact.xml25 that implement PsiXmlInteractionWriter

Modifier and Type	Class	Description
class	XmlBasicBinaryInteractionWriter	Compact XML 2.5 writer for a basic binary interaction (ignore experimental details) which has a fullname and aliases in addition to a shortname
class	XmlBasicInteractionWriter	Compact XML 2.5 writer for a basic interaction (ignore experimental details) which has a fullname and aliases in addition to a shortname
class	XmlBinaryInteractionEvidenceWriter	Compact XML 2.5 writer for an expanded binary interaction evidence (having modelled, intramolecular properties, list of experiments, list of interaction types, etc.).
class	XmlComplexWriter	Compact XML 2.5 writer for an expanded biological complex (ignore experimental details).
class	XmlInteractionEvidenceWriter	Compact XML 2.5 writer for an expanded interaction evidence (having modelled, intramolecular properties, list of experiments, list of interaction types, etc.).
class	XmlModelledBinaryInteractionWriter	Compact XML 2.5 writer for an expanded modelled binary interaction (ignore experimental details).
class	XmlModelledInteractionWriter	Compact XML 2.5 writer for an expanded modelled interaction (ignore experimental details).

Uses of PsiXmlInteractionWriter in psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.compact.xml30

Classes in psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.compact.xml30 that implement PsiXmlInteractionWriter

Modifier and Type	Class	Description
class	XmlBinaryInteractionEvidenceWriter	Compact XML 3.0 writer for an expanded binary interaction evidence (having modelled, intramolecular properties, list of experiments, list of interaction types, etc.).
class	XmlInteractionEvidenceWriter	Compact XML 3.0 writer for an expanded interaction evidence (having modelled, intramolecular properties, list of experiments, list of interaction types, etc.).
class	XmlModelledBinaryInteractionWriter	Compact XML 3.0 writer for an expanded modelled binary interaction (ignore experimental details).
class	XmlModelledInteractionWriter	Compact XML 3.0 writer for an expanded modelled interaction (ignore experimental details).

Uses of PsiXmlInteractionWriter in psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.expanded.xml25

Classes in psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.expanded.xml25 that implement PsiXmlInteractionWriter

Modifier and Type	Class	Description
class	XmlBasicBinaryInteractionWriter	Expanded XML 2.5 writer for a basic binary interaction (ignore experimental details).
class	XmlBasicInteractionWriter	Expanded XML 2.5 writer for a basic interaction (ignore experimental details).
class	XmlBinaryInteractionEvidenceWriter	Expanded XML 2.5 writer for an expanded binary interaction evidence (having modelled, intramolecular properties, list of experiments, list of interaction types, etc.).
class	XmlComplexWriter	Expanded XML 2.5 writer for an expanded biological complexes (ignore experimental details).
class	XmlInteractionEvidenceWriter	Expanded XML 2.5 writer for an expanded interaction evidence (having modelled, intramolecular properties, list of experiments, list of interaction types, etc.).
class	XmlModelledBinaryInteractionWriter	Expanded XML 2.5 writer for an expanded modelled binary interaction (ignore experimental details).
class	XmlModelledInteractionWriter	Expanded XML 2.5 writer for an expanded modelled interaction (ignore experimental details).

Uses of PsiXmlInteractionWriter in psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.expanded.xml30

Classes in psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.expanded.xml30 that implement PsiXmlInteractionWriter

Modifier and Type	Class	Description
class	XmlBinaryInteractionEvidenceWriter	Expanded XML 3.0 writer for an expanded binary interaction evidence (having modelled, intramolecular properties, list of experiments, list of interaction types, etc.).
class	XmlInteractionEvidenceWriter	Expanded XML 3.0 writer for an expanded interaction evidence (having modelled, intramolecular properties, list of experiments, list of interaction types, etc.).
class	XmlModelledBinaryInteractionWriter	Expanded XML 3.0 writer for an expanded modelled binary interaction (ignore experimental details).
class	XmlModelledInteractionWriter	Expanded XML 3.0 writer for an expanded modelled interaction (ignore experimental details).

Uses of PsiXmlInteractionWriter in psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.xml25

Classes in psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.xml25 that implement PsiXmlInteractionWriter

Modifier and Type	Class	Description
class	AbstractXmlInteractionEvidenceWriter<I extends InteractionEvidence>	Abstract class for interaction evidence writers that write expanded interactions (having modelled, intramolecular properties, list of experiments, list of interaction types, etc.)
class	AbstractXmlInteractionWriter<I extends Interaction>	Abstract class for extended XML 2.5 interaction writer
class	AbstractXmlModelledInteractionWriter<I extends ModelledInteraction>	Abstract class for XML 2.5 writers of modelled interaction

Uses of PsiXmlInteractionWriter in psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.xml30

Classes in psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.xml30 that implement PsiXmlInteractionWriter

Modifier and Type	Class	Description
class	AbstractXmlInteractionEvidenceWriter<I extends InteractionEvidence>	Abstract class for interaction evidence writers that write expanded interactions (having modelled, intramolecular properties, list of experiments, list of interaction types, etc.)
class	AbstractXmlModelledInteractionWriter<I extends ModelledInteraction>	Abstract class for XML 3.0 writers of modelled interaction

Uses of PsiXmlInteractionWriter in psidev.psi.mi.jami.xml.io.writer.expanded

Methods in psidev.psi.mi.jami.xml.io.writer.expanded with parameters of type PsiXmlInteractionWriter

Modifier and Type	Method	Description
void	AbstractExpandedXmlMixWriter.setComplexWriter(PsiXmlInteractionWriter<ModelledInteraction> complexWriter)	Setter for the field complexWriter.