Uses of Interface
psidev.psi.mi.jami.model.ParticipantCandidate

Packages that use ParticipantCandidate

Package	Description
psidev.psi.mi.jami.crosslink.extension
psidev.psi.mi.jami.enricher.listener.impl
psidev.psi.mi.jami.enricher.listener.impl.log
psidev.psi.mi.jami.enricher.listener.impl.writer
psidev.psi.mi.jami.enricher.util
psidev.psi.mi.jami.listener
psidev.psi.mi.jami.listener.impl
psidev.psi.mi.jami.model
psidev.psi.mi.jami.model.impl
psidev.psi.mi.jami.utils.clone
psidev.psi.mi.jami.xml.io.writer.elements
psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts.xml30
psidev.psi.mi.jami.xml.model.extension.xml253
psidev.psi.mi.jami.xml.model.extension.xml254
psidev.psi.mi.jami.xml.model.extension.xml300

Uses of ParticipantCandidate in psidev.psi.mi.jami.crosslink.extension

Classes in psidev.psi.mi.jami.crosslink.extension that implement ParticipantCandidate

Modifier and Type	Class	Description
class	CsvExperimentalParticipantCandidate	Crosslink CSV extension of ExperimentalParticipantCandidate.

Uses of ParticipantCandidate in psidev.psi.mi.jami.enricher.listener.impl

Methods in psidev.psi.mi.jami.enricher.listener.impl with parameters of type ParticipantCandidate

Modifier and Type	Method	Description
void	ExperimentalParticipantPoolEnricherListenerManager.onAddedCandidate(ExperimentalParticipantPool participant, ParticipantCandidate added)	onAddedCandidate
void	ParticipantPoolEnricherListenerManager.onAddedCandidate(P participant, ParticipantCandidate added)	onAddedCandidate
void	ExperimentalParticipantPoolEnricherListenerManager.onRemovedCandidate(ExperimentalParticipantPool participant, ParticipantCandidate removed)	onRemovedCandidate
void	ParticipantPoolEnricherListenerManager.onRemovedCandidate(P participant, ParticipantCandidate removed)	onRemovedCandidate

Uses of ParticipantCandidate in psidev.psi.mi.jami.enricher.listener.impl.log

Methods in psidev.psi.mi.jami.enricher.listener.impl.log with parameters of type ParticipantCandidate

Modifier and Type	Method	Description
void	ExperimentalParticipantPoolEnricherLogger.onAddedCandidate(ExperimentalParticipantPool protein, ParticipantCandidate added)	onAddedCandidate
void	ExperimentalParticipantPoolEnricherLogger.onRemovedCandidate(ExperimentalParticipantPool protein, ParticipantCandidate removed)	onRemovedCandidate

Uses of ParticipantCandidate in psidev.psi.mi.jami.enricher.listener.impl.writer

Methods in psidev.psi.mi.jami.enricher.listener.impl.writer with parameters of type ParticipantCandidate

Modifier and Type	Method	Description
void	ExperimentalParticipantPoolEnricherStatisticsWriter.onAddedCandidate(ExperimentalParticipantPool participant, ParticipantCandidate added)	onAddedCandidate
void	ParticipantPoolEnricherStatisticsWriter.onAddedCandidate(P participant, ParticipantCandidate added)	onAddedCandidate
void	ExperimentalParticipantPoolEnricherStatisticsWriter.onRemovedCandidate(ExperimentalParticipantPool participant, ParticipantCandidate removed)	onRemovedCandidate
void	ParticipantPoolEnricherStatisticsWriter.onRemovedCandidate(P participant, ParticipantCandidate removed)	onRemovedCandidate

Uses of ParticipantCandidate in psidev.psi.mi.jami.enricher.util

Methods in psidev.psi.mi.jami.enricher.util with type parameters of type ParticipantCandidate

Modifier and Type	Method	Description
static <P extends ParticipantCandidate> void	EnricherUtils.mergeParticipantCandidates(ParticipantPool termToEnrich, Collection<P> toEnrichParticipants, Collection<P> fetchedParticipants, boolean remove, ParticipantPoolChangeListener poolListener, EntityEnricher participantEnricher)	mergeParticipantCandidates.

Uses of ParticipantCandidate in psidev.psi.mi.jami.listener

Methods in psidev.psi.mi.jami.listener with parameters of type ParticipantCandidate

Modifier and Type	Method	Description
void	ParticipantPoolChangeListener.onAddedCandidate(F participant, ParticipantCandidate added)	onAddedCandidate
void	ParticipantPoolChangeListener.onRemovedCandidate(F participant, ParticipantCandidate removed)	onRemovedCandidate

Uses of ParticipantCandidate in psidev.psi.mi.jami.listener.impl

Methods in psidev.psi.mi.jami.listener.impl with parameters of type ParticipantCandidate

Modifier and Type	Method	Description
void	ExperimentalParticipantPoolChangeLogger.onAddedCandidate(ExperimentalParticipantPool protein, ParticipantCandidate added)	onAddedCandidate
void	ParticipantPoolChangeLogger.onAddedCandidate(T protein, ParticipantCandidate added)	onAddedCandidate
void	ExperimentalParticipantPoolChangeLogger.onRemovedCandidate(ExperimentalParticipantPool protein, ParticipantCandidate removed)	onRemovedCandidate
void	ParticipantPoolChangeLogger.onRemovedCandidate(T protein, ParticipantCandidate removed)	onRemovedCandidate

Uses of ParticipantCandidate in psidev.psi.mi.jami.model

Classes in psidev.psi.mi.jami.model with type parameters of type ParticipantCandidate

Modifier and Type	Interface	Description
interface	ParticipantPool<I extends Interaction,F extends Feature,P extends ParticipantCandidate>	A pool of participants that can be grouped together as a single participant as they are interchangeable

Subinterfaces of ParticipantCandidate in psidev.psi.mi.jami.model

Modifier and Type	Interface	Description
interface	ExperimentalParticipantCandidate	Interface for experimental participant candidates
interface	ModelledParticipantCandidate	Interface for modelled participant candidates

Uses of ParticipantCandidate in psidev.psi.mi.jami.model.impl

Classes in psidev.psi.mi.jami.model.impl with type parameters of type ParticipantCandidate

Modifier and Type	Class	Description
class	AbstractParticipantPool<I extends Interaction,F extends Feature,P extends ParticipantCandidate>	Abstract class for Participant pool

Classes in psidev.psi.mi.jami.model.impl that implement ParticipantCandidate

Modifier and Type	Class	Description
class	AbstractParticipantCandidate<P extends ParticipantPool,F extends Feature>	Abstract class for participant candidate
class	DefaultExperimentalParticipantCandidate	Default implementation of experimental participant candidate
class	DefaultModelledParticipantCandidate	Default implementation of modelled participant candidate
class	DefaultParticipantCandidate	Default implementation of participant candidate

Uses of ParticipantCandidate in psidev.psi.mi.jami.utils.clone

Methods in psidev.psi.mi.jami.utils.clone with parameters of type ParticipantCandidate

Modifier and Type	Method	Description
static void	ParticipantCandidateCloner.copyAndOverrideBasicCandidateProperties(ParticipantCandidate source, ParticipantCandidate target, boolean createNewFeature)	This method will copy properties of participant candidate source in participant candidate target and will override all the other properties of Target participant.

Uses of ParticipantCandidate in psidev.psi.mi.jami.xml.io.writer.elements

Methods in psidev.psi.mi.jami.xml.io.writer.elements with type parameters of type ParticipantCandidate

Modifier and Type	Method	Description
static <P extends ParticipantCandidate> PsiXmlElementWriter<P>[]	PsiXmlElementWriterFactory.createParticipantCandidateWriter(XMLStreamWriter streamWriter, boolean extended, PsiXmlObjectCache objectIndex, PsiXmlVersion version, PsiXmlType xmlType, InteractionCategory category, PsiXmlElementWriter<Interactor> interactorWriter, PsiXmlElementWriter<ModelledFeature> modelledFeatureWriter, PsiXmlElementWriter<FeatureEvidence> featureEvidenceWriter)	createParticipantCandidateWriter.

Uses of ParticipantCandidate in psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts.xml30

Classes in psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts.xml30 with type parameters of type ParticipantCandidate

Modifier and Type	Class	Description
class	AbstractXmlParticipantCandidateWriter<P extends ParticipantCandidate,F extends Feature>	Abstract Xml writer for participant candidate

Uses of ParticipantCandidate in psidev.psi.mi.jami.xml.model.extension.xml253

Classes in psidev.psi.mi.jami.xml.model.extension.xml253 with type parameters of type ParticipantCandidate

Modifier and Type	Class	Description
static class	AbstractXmlParticipant.JAXBInteractorCandidateWrapper<I extends Interaction,F extends Feature,P extends ParticipantCandidate>
class	AbstractXmlParticipantPool<I extends Interaction,F extends Feature,P extends ParticipantCandidate>	Abstract class for XML Participant pool

Classes in psidev.psi.mi.jami.xml.model.extension.xml253 that implement ParticipantCandidate

Modifier and Type	Class	Description
class	XmlExperimentalParticipantCandidate	Xml implementation of ParticipantEvidence
class	XmlExperimentalParticipantCandidateWrapper	Wrapper for Xml participants candidates Addeding new modelled feature to this participant will not add new feature evidences to the wrapped participant evidence as they are incompatibles.
class	XmlModelledParticipantCandidate	XML implementation of ModelledParticipantCandidate
class	XmlParticipantCandidateWrapper	Wrapper for XmlParticipantCandidate so it implements ModelledParticipantCanidate

Methods in psidev.psi.mi.jami.xml.model.extension.xml253 that return ParticipantCandidate

Modifier and Type	Method	Description
ParticipantCandidate<ParticipantPool,Feature>	XmlParticipantCandidateWrapper.getWrappedParticipant()	getWrappedParticipant.

Methods in psidev.psi.mi.jami.xml.model.extension.xml253 that return types with arguments of type ParticipantCandidate

Modifier and Type	Method	Description
AbstractXmlParticipantPool<I,F,? extends ParticipantCandidate>	AbstractXmlParticipant.getParticipantPool()	getParticipantPool.

Method parameters in psidev.psi.mi.jami.xml.model.extension.xml253 with type arguments of type ParticipantCandidate

Modifier and Type	Method	Description
protected void	AbstractXmlParticipant.setJAXBInteractorCandidates(AbstractXmlParticipant.JAXBInteractorCandidateWrapper<I,F,? extends ParticipantCandidate> value)	Sets the value of the interactor candidates property.

Constructors in psidev.psi.mi.jami.xml.model.extension.xml253 with parameters of type ParticipantCandidate

Constructor	Description
XmlParticipantCandidateWrapper(ParticipantCandidate part, ModelledParticipantPool parent)	Constructor for XmlParticipantCandidateWrapper.

Uses of ParticipantCandidate in psidev.psi.mi.jami.xml.model.extension.xml254

Classes in psidev.psi.mi.jami.xml.model.extension.xml254 with type parameters of type ParticipantCandidate

Modifier and Type	Class	Description
static class	AbstractXmlParticipant.JAXBInteractorCandidateWrapper<I extends Interaction,F extends Feature,P extends ParticipantCandidate>
class	AbstractXmlParticipantPool<I extends Interaction,F extends Feature,P extends ParticipantCandidate>	Abstract class for XML Participant pool

Classes in psidev.psi.mi.jami.xml.model.extension.xml254 that implement ParticipantCandidate

Modifier and Type	Class	Description
class	XmlExperimentalParticipantCandidate	Xml implementation of ParticipantEvidence
class	XmlExperimentalParticipantCandidateWrapper	Wrapper for Xml participants candidates Addeding new modelled feature to this participant will not add new feature evidences to the wrapped participant evidence as they are incompatibles.
class	XmlModelledParticipantCandidate	XML implementation of ModelledParticipantCandidate
class	XmlParticipantCandidateWrapper	Wrapper for XmlParticipantCandidate so it implements ModelledParticipantCanidate

Methods in psidev.psi.mi.jami.xml.model.extension.xml254 that return ParticipantCandidate

Modifier and Type	Method	Description
ParticipantCandidate<ParticipantPool,Feature>	XmlParticipantCandidateWrapper.getWrappedParticipant()	getWrappedParticipant.

Methods in psidev.psi.mi.jami.xml.model.extension.xml254 that return types with arguments of type ParticipantCandidate

Modifier and Type	Method	Description
AbstractXmlParticipantPool<I,F,? extends ParticipantCandidate>	AbstractXmlParticipant.getParticipantPool()	getParticipantPool.

Method parameters in psidev.psi.mi.jami.xml.model.extension.xml254 with type arguments of type ParticipantCandidate

Modifier and Type	Method	Description
protected void	AbstractXmlParticipant.setJAXBInteractorCandidates(AbstractXmlParticipant.JAXBInteractorCandidateWrapper<I,F,? extends ParticipantCandidate> value)	Sets the value of the interactor candidates property.

Constructors in psidev.psi.mi.jami.xml.model.extension.xml254 with parameters of type ParticipantCandidate

Constructor	Description
XmlParticipantCandidateWrapper(ParticipantCandidate part, ModelledParticipantPool parent)	Constructor for XmlParticipantCandidateWrapper.

Uses of ParticipantCandidate in psidev.psi.mi.jami.xml.model.extension.xml300

Classes in psidev.psi.mi.jami.xml.model.extension.xml300 with type parameters of type ParticipantCandidate

Modifier and Type	Class	Description
static class	AbstractXmlParticipant.JAXBInteractorCandidateWrapper<I extends Interaction,F extends Feature,P extends ParticipantCandidate>
class	AbstractXmlParticipantPool<I extends Interaction,F extends Feature,P extends ParticipantCandidate>	Abstract class for XML Participant pool

Classes in psidev.psi.mi.jami.xml.model.extension.xml300 that implement ParticipantCandidate

Modifier and Type	Class	Description
class	XmlExperimentalParticipantCandidate	Xml implementation of ParticipantEvidence
class	XmlExperimentalParticipantCandidateWrapper	Wrapper for Xml participants candidates Addeding new modelled feature to this participant will not add new feature evidences to the wrapped participant evidence as they are incompatibles.
class	XmlModelledParticipantCandidate	XML implementation of ModelledParticipantCandidate
class	XmlParticipantCandidateWrapper	Wrapper for XmlParticipantCandidate so it implements ModelledParticipantCanidate

Methods in psidev.psi.mi.jami.xml.model.extension.xml300 that return ParticipantCandidate

Modifier and Type	Method	Description
ParticipantCandidate<ParticipantPool,Feature>	XmlParticipantCandidateWrapper.getWrappedParticipant()	getWrappedParticipant.

Methods in psidev.psi.mi.jami.xml.model.extension.xml300 that return types with arguments of type ParticipantCandidate

Modifier and Type	Method	Description
AbstractXmlParticipantPool<I,F,? extends ParticipantCandidate>	AbstractXmlParticipant.getParticipantPool()	getParticipantPool.

Method parameters in psidev.psi.mi.jami.xml.model.extension.xml300 with type arguments of type ParticipantCandidate

Modifier and Type	Method	Description
protected void	AbstractXmlParticipant.setJAXBInteractorCandidates(AbstractXmlParticipant.JAXBInteractorCandidateWrapper<I,F,? extends ParticipantCandidate> value)	Sets the value of the interactor candidates property.

Constructors in psidev.psi.mi.jami.xml.model.extension.xml300 with parameters of type ParticipantCandidate

Constructor	Description
XmlParticipantCandidateWrapper(ParticipantCandidate part, ModelledParticipantPool parent)	Constructor for XmlParticipantCandidateWrapper.