Uses of Interface
psidev.psi.mi.jami.model.Confidence
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Uses of Confidence in psidev.psi.mi.jami.binary.impl
Methods in psidev.psi.mi.jami.binary.impl that return types with arguments of type Confidence Modifier and Type Method Description Collection<Confidence>BinaryInteractionEvidenceWrapper. getConfidences()getConfidencesCollection<Confidence>DefaultBinaryInteractionEvidence. getConfidences()Getter for the fieldconfidences.Method parameters in psidev.psi.mi.jami.binary.impl with type arguments of type Confidence Modifier and Type Method Description protected voidDefaultBinaryInteractionEvidence. initialiseExperimentalConfidencesWith(Collection<Confidence> confidences)initialiseExperimentalConfidencesWith -
Uses of Confidence in psidev.psi.mi.jami.enricher.listener.impl
Methods in psidev.psi.mi.jami.enricher.listener.impl with parameters of type Confidence Modifier and Type Method Description voidExperimentEnricherListenerManager. onAddedConfidence(Experiment experiment, Confidence added)Listen to the event where a confidence has been added to the object confidences.voidInteractionEvidenceEnricherListenerManager. onAddedConfidence(InteractionEvidence o, Confidence added)Listen to the event where a confidence has been added to the object confidences.voidModelledInteractionEnricherListenerManager. onAddedConfidence(I o, Confidence added)Listen to the event where a confidence has been added to the object confidences.voidParticipantEvidenceEnricherListenerManager. onAddedConfidence(P o, Confidence added)Listen to the event where a confidence has been added to the object confidences.voidExperimentEnricherListenerManager. onRemovedConfidence(Experiment experiment, Confidence removed)Listen to the event where a confidence has been removed from the object confidences.voidInteractionEvidenceEnricherListenerManager. onRemovedConfidence(InteractionEvidence o, Confidence removed)Listen to the event where a confidence has been removed from the object confidences.voidModelledInteractionEnricherListenerManager. onRemovedConfidence(I o, Confidence removed)Listen to the event where a confidence has been removed from the object confidences.voidParticipantEvidenceEnricherListenerManager. onRemovedConfidence(P o, Confidence removed)Listen to the event where a confidence has been removed from the object confidences. -
Uses of Confidence in psidev.psi.mi.jami.enricher.listener.impl.writer
Methods in psidev.psi.mi.jami.enricher.listener.impl.writer with parameters of type Confidence Modifier and Type Method Description voidExperimentEnricherStatisticsWriter. onAddedConfidence(Experiment o, Confidence added)Listen to the event where a confidence has been added to the object confidences.voidInteractionEvidenceEnricherStatisticsWriter. onAddedConfidence(InteractionEvidence o, Confidence added)Listen to the event where a confidence has been added to the object confidences.voidModelledInteractionEnricherStatisticsWriter. onAddedConfidence(I o, Confidence added)Listen to the event where a confidence has been added to the object confidences.voidParticipantEvidenceEnricherStatisticsWriter. onAddedConfidence(P o, Confidence added)Listen to the event where a confidence has been added to the object confidences.voidExperimentEnricherStatisticsWriter. onRemovedConfidence(Experiment o, Confidence removed)Listen to the event where a confidence has been removed from the object confidences.voidInteractionEvidenceEnricherStatisticsWriter. onRemovedConfidence(InteractionEvidence o, Confidence removed)Listen to the event where a confidence has been removed from the object confidences.voidModelledInteractionEnricherStatisticsWriter. onRemovedConfidence(I o, Confidence removed)Listen to the event where a confidence has been removed from the object confidences.voidParticipantEvidenceEnricherStatisticsWriter. onRemovedConfidence(P o, Confidence removed)Listen to the event where a confidence has been removed from the object confidences. -
Uses of Confidence in psidev.psi.mi.jami.enricher.util
Methods in psidev.psi.mi.jami.enricher.util with type parameters of type Confidence Modifier and Type Method Description static <T,C extends Confidence>
voidEnricherUtils. mergeConfidences(T termToEnrich, Collection<C> toEnrichConfidences, Collection<C> fetchedConfidences, boolean remove, ConfidencesChangeListener<T> confListener)mergeConfidences. -
Uses of Confidence in psidev.psi.mi.jami.json.elements
Methods in psidev.psi.mi.jami.json.elements that return types with arguments of type Confidence Modifier and Type Method Description JsonElementWriter<Confidence>SimpleJsonInteractionEvidenceWriter. getConfidenceWriter()Getter for the fieldconfidenceWriter.JsonElementWriter<Confidence>SimpleJsonModelledInteractionWriter. getConfidenceWriter()Getter for the fieldconfidenceWriter.JsonElementWriter<Confidence>SimpleJsonParticipantEvidenceWriter. getConfidenceWriter()Getter for the fieldconfidenceWriter.Methods in psidev.psi.mi.jami.json.elements with parameters of type Confidence Modifier and Type Method Description voidSimpleJsonConfidenceWriter. write(Confidence object)write.Method parameters in psidev.psi.mi.jami.json.elements with type arguments of type Confidence Modifier and Type Method Description voidSimpleJsonInteractionEvidenceWriter. setConfidenceWriter(JsonElementWriter<Confidence> confidenceWriter)Setter for the fieldconfidenceWriter.voidSimpleJsonModelledInteractionWriter. setConfidenceWriter(JsonElementWriter<Confidence> confidenceWriter)Setter for the fieldconfidenceWriter.voidSimpleJsonParticipantEvidenceWriter. setConfidenceWriter(JsonElementWriter<Confidence> confidenceWriter)Setter for the fieldconfidenceWriter. -
Uses of Confidence in psidev.psi.mi.jami.listener
Methods in psidev.psi.mi.jami.listener with parameters of type Confidence Modifier and Type Method Description voidConfidencesChangeListener. onAddedConfidence(T o, Confidence added)Listen to the event where a confidence has been added to the object confidences.voidConfidencesChangeListener. onRemovedConfidence(T o, Confidence removed)Listen to the event where a confidence has been removed from the object confidences. -
Uses of Confidence in psidev.psi.mi.jami.listener.impl
Methods in psidev.psi.mi.jami.listener.impl with parameters of type Confidence Modifier and Type Method Description voidComplexChangeLogger. onAddedConfidence(Complex o, Confidence added)Listen to the event where a confidence has been added to the object confidences.voidExperimentChangeLogger. onAddedConfidence(Experiment experiment, Confidence added)Listen to the event where a confidence has been added to the object confidences.voidInteractionEvidenceChangeLogger. onAddedConfidence(InteractionEvidence o, Confidence added)Listen to the event where a confidence has been added to the object confidences.voidModelledInteractionChangeLogger. onAddedConfidence(I o, Confidence added)Listen to the event where a confidence has been added to the object confidences.voidParticipantEvidenceChangeLogger. onAddedConfidence(T o, Confidence added)Listen to the event where a confidence has been added to the object confidences.voidComplexChangeLogger. onRemovedConfidence(Complex o, Confidence removed)Listen to the event where a confidence has been removed from the object confidences.voidExperimentChangeLogger. onRemovedConfidence(Experiment experiment, Confidence removed)Listen to the event where a confidence has been removed from the object confidences.voidInteractionEvidenceChangeLogger. onRemovedConfidence(InteractionEvidence o, Confidence removed)Listen to the event where a confidence has been removed from the object confidences.voidModelledInteractionChangeLogger. onRemovedConfidence(I o, Confidence removed)Listen to the event where a confidence has been removed from the object confidences.voidParticipantEvidenceChangeLogger. onRemovedConfidence(T o, Confidence removed)Listen to the event where a confidence has been removed from the object confidences. -
Uses of Confidence in psidev.psi.mi.jami.model
Subinterfaces of Confidence in psidev.psi.mi.jami.model Modifier and Type Interface Description interfaceModelledConfidenceA modelled confidence is a confidence for a modelled interaction.Methods in psidev.psi.mi.jami.model with type parameters of type Confidence Modifier and Type Method Description <C extends Confidence>
Collection<C>Experiment. getConfidences()Collection of confidences for a specific experiment.<C extends Confidence>
Collection<C>InteractionEvidence. getConfidences()The confidences in this interaction.<C extends Confidence>
Collection<C>ParticipantEvidence. getConfidences()The confidences for this participant. -
Uses of Confidence in psidev.psi.mi.jami.model.impl
Classes in psidev.psi.mi.jami.model.impl that implement Confidence Modifier and Type Class Description classDefaultConfidenceDefault implementation for Confidence Notes: The equals and hashcode methods have been overridden to be consistent with UnambiguousConfidenceComparatorclassDefaultModelledConfidenceDefault implementation for ModelledInteraction Notes: The equals and hashcode methods have been overridden to be consistent with UnambiguousConfidenceComparatorMethods in psidev.psi.mi.jami.model.impl that return types with arguments of type Confidence Modifier and Type Method Description Collection<Confidence>DefaultExperiment. getConfidences()Getter for the fieldconfidences.Collection<Confidence>DefaultExperimentalParticipantPool. getConfidences()Getter for the fieldconfidences.Collection<Confidence>DefaultInteractionEvidence. getConfidences()Getter for the fieldconfidences.Collection<Confidence>DefaultParticipantEvidence. getConfidences()Getter for the fieldconfidences.Method parameters in psidev.psi.mi.jami.model.impl with type arguments of type Confidence Modifier and Type Method Description protected voidDefaultExperiment. initialiseConfidencesWith(Collection<Confidence> confs)initialiseConfidencesWithprotected voidDefaultExperimentalParticipantPool. initialiseConfidencesWith(Collection<Confidence> confidences)initialiseConfidencesWithprotected voidDefaultParticipantEvidence. initialiseConfidencesWith(Collection<Confidence> confidences)initialiseConfidencesWithprotected voidDefaultInteractionEvidence. initialiseExperimentalConfidencesWith(Collection<Confidence> confidences)initialiseExperimentalConfidencesWith -
Uses of Confidence in psidev.psi.mi.jami.tab.extension
Classes in psidev.psi.mi.jami.tab.extension that implement Confidence Modifier and Type Class Description classMitabConfidenceA MitabConfidence is a confidence with some text -
Uses of Confidence in psidev.psi.mi.jami.tab.io.writer.feeder
Methods in psidev.psi.mi.jami.tab.io.writer.feeder with parameters of type Confidence Modifier and Type Method Description voidAbstractMitabColumnFeeder. writeConfidence(Confidence conf)This method will write a confidence with a text if text is not nullvoidDefaultMitabColumnFeeder. writeConfidence(Confidence conf)This method will write a confidence with a text if text is not nullvoidMitabColumnFeeder. writeConfidence(Confidence conf)This method will write a confidence with a text if text is not null -
Uses of Confidence in psidev.psi.mi.jami.tab.io.writer.feeder.extended
Methods in psidev.psi.mi.jami.tab.io.writer.feeder.extended with parameters of type Confidence Modifier and Type Method Description voidExtendedMitabInteractionEvidenceFeeder. writeConfidence(Confidence conf)This method will write a confidence with a text if text is not nullvoidExtendedMitabModelledInteractionFeeder. writeConfidence(Confidence conf)This method will write a confidence with a text if text is not null -
Uses of Confidence in psidev.psi.mi.jami.utils
Methods in psidev.psi.mi.jami.utils that return Confidence Modifier and Type Method Description static ConfidenceConfidenceUtils. createAuthorBasedConfidence(String value)createAuthorBasedConfidencestatic ConfidenceConfidenceUtils. createConfidence(String typeName, String value)createConfidencestatic ConfidenceConfidenceUtils. createConfidence(String typeName, String typeMi, String value)createConfidenceMethods in psidev.psi.mi.jami.utils that return types with arguments of type Confidence Modifier and Type Method Description static Collection<Confidence>ConfidenceUtils. collectAllConfidencesHavingType(Collection<? extends Confidence> confs, String typeId, String typeName)Collect all confidences having a specific typeMethods in psidev.psi.mi.jami.utils with parameters of type Confidence Modifier and Type Method Description static booleanConfidenceUtils. doesConfidenceHaveType(Confidence conf, String typeId, String typeName)Check the type of a confidenceMethod parameters in psidev.psi.mi.jami.utils with type arguments of type Confidence Modifier and Type Method Description static Collection<Confidence>ConfidenceUtils. collectAllConfidencesHavingType(Collection<? extends Confidence> confs, String typeId, String typeName)Collect all confidences having a specific type -
Uses of Confidence in psidev.psi.mi.jami.utils.comparator.confidence
Methods in psidev.psi.mi.jami.utils.comparator.confidence with parameters of type Confidence Modifier and Type Method Description static booleanDefaultConfidenceComparator. areEquals(Confidence confidence1, Confidence confidence2)Use DefaultConfidenceComparator to know if two confidences are equals.static booleanUnambiguousConfidenceComparator. areEquals(Confidence conf1, Confidence conf2)Use UnambiguousConfidenceComparator to know if two confidences are equals.intConfidenceComparator. compare(Confidence confidence1, Confidence confidence2)It will compares the confidence types first, then the units and finally the value.intUnambiguousConfidenceComparator. compare(Confidence confidence1, Confidence confidence2)It will compares the confidence types first, then the units and finally the value.static intUnambiguousConfidenceComparator. hashCode(Confidence conf)hashCode -
Uses of Confidence in psidev.psi.mi.jami.xml.io.writer.elements
Methods in psidev.psi.mi.jami.xml.io.writer.elements that return types with arguments of type Confidence Modifier and Type Method Description static PsiXmlElementWriter<Confidence>[]PsiXmlElementWriterFactory. createConfidenceWriters(XMLStreamWriter streamWriter, boolean extended, PsiXmlObjectCache objectIndex, PsiXmlVersion version, PsiXmlVariableNameWriter<CvTerm> confidenceTypeWriter, PsiXmlPublicationWriter publicationWriter)createConfidenceWriters. -
Uses of Confidence in psidev.psi.mi.jami.xml.io.writer.elements.impl
Methods in psidev.psi.mi.jami.xml.io.writer.elements.impl with parameters of type Confidence Modifier and Type Method Description voidXmlConfidenceWriter. write(Confidence object)write.protected voidXmlConfidenceWriter. writeOtherProperties(Confidence object)writeOtherProperties. -
Uses of Confidence in psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts
Methods in psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts that return types with arguments of type Confidence Modifier and Type Method Description PsiXmlElementWriter<Confidence>AbstractXmlExperimentWriter. getConfidenceWriter()Getter for the fieldconfidenceWriter.PsiXmlElementWriter<Confidence>AbstractXmlInteractionEvidenceWriter. getConfidenceWriter()Getter for the fieldconfidenceWriter.PsiXmlElementWriter<Confidence>AbstractXmlModelledInteractionWriter. getConfidenceWriter()Getter for the fieldconfidenceWriter.PsiXmlElementWriter<Confidence>AbstractXmlParticipantEvidenceWriter. getConfidenceWriter()Getter for the fieldconfidenceWriter.Method parameters in psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts with type arguments of type Confidence Modifier and Type Method Description voidAbstractXmlExperimentWriter. setConfidenceWriter(PsiXmlElementWriter<Confidence> confidenceWriter)Setter for the fieldconfidenceWriter.voidAbstractXmlInteractionEvidenceWriter. setConfidenceWriter(PsiXmlElementWriter<Confidence> confidenceWriter)Setter for the fieldconfidenceWriter.voidAbstractXmlModelledInteractionWriter. setConfidenceWriter(PsiXmlElementWriter<Confidence> confidenceWriter)Setter for the fieldconfidenceWriter.voidAbstractXmlParticipantEvidenceWriter. setConfidenceWriter(PsiXmlElementWriter<Confidence> confidenceWriter)Setter for the fieldconfidenceWriter. -
Uses of Confidence in psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.xml25.xml253
Methods in psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.xml25.xml253 with parameters of type Confidence Modifier and Type Method Description voidXmlConfidenceWriter. write(Confidence object)write. -
Uses of Confidence in psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.xml25.xml254
Methods in psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.xml25.xml254 with parameters of type Confidence Modifier and Type Method Description voidXmlConfidenceWriter. write(Confidence object)write. -
Uses of Confidence in psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.xml30
Methods in psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.xml30 with parameters of type Confidence Modifier and Type Method Description voidXmlConfidenceWriter. write(Confidence object)write. -
Uses of Confidence in psidev.psi.mi.jami.xml.io.writer.elements.impl.xml30
Methods in psidev.psi.mi.jami.xml.io.writer.elements.impl.xml30 with parameters of type Confidence Modifier and Type Method Description voidXmlModelledConfidenceWriter. write(Confidence object)write.protected voidXmlModelledConfidenceWriter. writeOtherProperties(Confidence object)writeOtherProperties. -
Uses of Confidence in psidev.psi.mi.jami.xml.model.extension.binary
Methods in psidev.psi.mi.jami.xml.model.extension.binary that return types with arguments of type Confidence Modifier and Type Method Description Collection<Confidence>AbstractXmlBinaryInteractionEvidence. getConfidences()Getter for the fieldconfidences.Collection<Confidence>XmlBinaryInteractionEvidenceWrapper. getConfidences()The confidences in this interaction. -
Uses of Confidence in psidev.psi.mi.jami.xml.model.extension.xml253
Classes in psidev.psi.mi.jami.xml.model.extension.xml253 that implement Confidence Modifier and Type Class Description classAbstractXmlConfidenceabstract Xml implementation of confidenceclassXmlConfidenceXml implementation of confidenceclassXmlConfidenceWrapperA wrapper for confidencesclassXmlModelledConfidenceXml implementation of ModelledConfidenceMethods in psidev.psi.mi.jami.xml.model.extension.xml253 that return types with arguments of type Confidence Modifier and Type Method Description Collection<Confidence>AbstractXmlExperiment. getConfidences()getConfidences.Collection<Confidence>AbstractXmlInteractionEvidence. getConfidences()getConfidences.Collection<Confidence>XmlExperimentalParticipantPool. getConfidences()The confidences for this participant.Collection<Confidence>XmlParticipantEvidence. getConfidences()getConfidences.List<Confidence>AbstractXmlExperiment.JAXBConfidenceWrapper. getJAXBConfidences()List<Confidence>AbstractXmlInteractionEvidence.JAXBConfidenceWrapper. getJAXBConfidences()List<Confidence>XmlParticipantEvidence.JAXBConfidenceWrapper. getJAXBConfidences()Constructors in psidev.psi.mi.jami.xml.model.extension.xml253 with parameters of type Confidence Constructor Description XmlConfidenceWrapper(Confidence conf)Constructor for XmlConfidenceWrapper. -
Uses of Confidence in psidev.psi.mi.jami.xml.model.extension.xml254
Classes in psidev.psi.mi.jami.xml.model.extension.xml254 that implement Confidence Modifier and Type Class Description classAbstractXmlConfidenceabstract Xml implementation of confidenceclassXmlConfidenceXml implementation of confidenceclassXmlConfidenceWrapperA wrapper for confidencesclassXmlModelledConfidenceXml implementation of ModelledConfidenceMethods in psidev.psi.mi.jami.xml.model.extension.xml254 that return types with arguments of type Confidence Modifier and Type Method Description Collection<Confidence>AbstractXmlExperiment. getConfidences()getConfidences.Collection<Confidence>AbstractXmlInteractionEvidence. getConfidences()getConfidences.Collection<Confidence>XmlExperimentalParticipantPool. getConfidences()The confidences for this participant.Collection<Confidence>XmlParticipantEvidence. getConfidences()getConfidences.List<Confidence>AbstractXmlExperiment.JAXBConfidenceWrapper. getJAXBConfidences()List<Confidence>AbstractXmlInteractionEvidence.JAXBConfidenceWrapper. getJAXBConfidences()List<Confidence>XmlParticipantEvidence.JAXBConfidenceWrapper. getJAXBConfidences()Constructors in psidev.psi.mi.jami.xml.model.extension.xml254 with parameters of type Confidence Constructor Description XmlConfidenceWrapper(Confidence conf)Constructor for XmlConfidenceWrapper. -
Uses of Confidence in psidev.psi.mi.jami.xml.model.extension.xml300
Classes in psidev.psi.mi.jami.xml.model.extension.xml300 that implement Confidence Modifier and Type Class Description classAbstractXmlConfidenceabstract Xml implementation of confidenceclassXmlConfidenceXml implementation of confidenceclassXmlConfidenceWrapperA wrapper for confidencesclassXmlModelledConfidenceXml 3.0 implementation of ModelledConfidenceMethods in psidev.psi.mi.jami.xml.model.extension.xml300 that return types with arguments of type Confidence Modifier and Type Method Description Collection<Confidence>AbstractXmlExperiment. getConfidences()getConfidences.Collection<Confidence>AbstractXmlInteractionEvidence. getConfidences()getConfidences.Collection<Confidence>XmlExperimentalParticipantPool. getConfidences()The confidences for this participant.Collection<Confidence>XmlParticipantEvidence. getConfidences()getConfidences.List<Confidence>AbstractXmlExperiment.JAXBConfidenceWrapper. getJAXBConfidences()List<Confidence>AbstractXmlInteractionEvidence.JAXBConfidenceWrapper. getJAXBConfidences()List<Confidence>XmlParticipantEvidence.JAXBConfidenceWrapper. getJAXBConfidences()Constructors in psidev.psi.mi.jami.xml.model.extension.xml300 with parameters of type Confidence Constructor Description XmlConfidenceWrapper(Confidence conf)Constructor for XmlConfidenceWrapper. -
Uses of Confidence in psidev.psi.mi.jami.xml.model.reference.xml253
Methods in psidev.psi.mi.jami.xml.model.reference.xml253 that return types with arguments of type Confidence Modifier and Type Method Description Collection<Confidence>AbstractExperimentRef. getConfidences()getConfidences. -
Uses of Confidence in psidev.psi.mi.jami.xml.model.reference.xml254
Methods in psidev.psi.mi.jami.xml.model.reference.xml254 that return types with arguments of type Confidence Modifier and Type Method Description Collection<Confidence>AbstractExperimentRef. getConfidences()getConfidences. -
Uses of Confidence in psidev.psi.mi.jami.xml.model.reference.xml300
Methods in psidev.psi.mi.jami.xml.model.reference.xml300 that return types with arguments of type Confidence Modifier and Type Method Description Collection<Confidence>AbstractExperimentRef. getConfidences()getConfidences.
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